Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6394 127 1e-24 seq6283 109 4e-19 seq6490 100 2e-16 >seq6394 Length=53086 Score = 127 bits (140), Expect = 1e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||||||||||| || ||| | || || Sbjct 6804 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCG 6863 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | || | ||| ||||| ||| Sbjct 6864 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 6923 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| ||| || ||||| | ||||| |||| Sbjct 6924 ATCTTGGACTTGACATTGT--CAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCT 6981 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || |||||||| ||||| || ||||| Sbjct 6982 TTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| ||||||||||| || | || || |||| ||| Sbjct 6348 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCC 6407 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 6408 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 6467 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || || ||||| | ||||| |||||| Sbjct 6468 ATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTT 6527 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||| ||||| Sbjct 6528 CCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || || |||| ||| Sbjct 7032 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCC 7091 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||| || | ||| | ||| ||||| ||| Sbjct 7092 AGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGA 7151 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | ||| || ||||| | || || ||||| Sbjct 7152 ATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTG 7211 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||| ||||| Sbjct 7212 CCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 102 bits (112), Expect = 6e-17 Identities = 137/189 (72%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| |||||||||||||||| ||| ||| | || || Sbjct 7260 ACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCA 7319 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | || | ||| ||||| ||| Sbjct 7320 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 7379 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| |||| ||| || ||||| | || || |||| Sbjct 7380 ATCTTGGACTTGACATTGT--CAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCT 7437 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 7438 TGCCGGTGA 7446 >seq6283 Length=33863 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| |||||| ||||||||||| || | || ||| | || || Sbjct 31267 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 31208 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| ||||| || || | || | ||| ||||| ||| Sbjct 31207 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGG 31148 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || || ||||||| || || ||||| Sbjct 31147 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTA 31088 Query 44309 CCCGTGAGGGTCTTCACGAA 44328 ||||| |||||||| ||||| Sbjct 31087 CCCGTCAGGGTCTTGACGAA 31068 >seq6490 Length=90610 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | || ||| | || ||||||||||| || || || | Sbjct 85284 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 85225 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | || ||||| ||| ||||| ||| | | Sbjct 85224 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 85165 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | ||| || ||||| | || |||||||| ||||| |||||||| |||| Sbjct 85164 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 85105 Query 44328 AGATTTGCAT 44337 | || ||||| Sbjct 85104 AAATCTGCAT 85095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359961697740414