Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6394 147 5e-30 seq6490 132 1e-25 seq6283 123 6e-23 >seq6394 Length=53086 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || || ||||||||||| || ||| || Sbjct 7009 CAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCCGAT 6950 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 6949 ACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 6890 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || |||||||| ||||| | || ||| ||||||| ||| || Sbjct 6889 CGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATC 6830 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 6829 CAGAAGGAGTCCACTCTCCACCTCGT 6804 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || || || ||||| || ||||| || ||| ||| Sbjct 7237 CAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCTGAC 7178 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || ||||||||||||||||| Sbjct 7177 ACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAGCAG 7118 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| || || || | || ||| |||| || ||| || Sbjct 7117 CGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAACATC 7058 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 7057 CAGAAGGAGTCTACTCTCCACCTCGT 7032 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || || ||||| ||||| || || || Sbjct 6553 CAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCTGAT 6494 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 6493 ACCATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 6434 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||||| || || || | || || | || || ||| || Sbjct 6433 CGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAACATC 6374 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 6373 CAGAAGGAGTCTACCCTCCACCTGGTT 6347 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||| || ||||| || || ||||| Sbjct 7446 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 7387 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || ||||| ||||||||||| || || || ||||| || | Sbjct 7386 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 7327 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || ||||||| ||| |||| || || || || || | Sbjct 7326 AGCAGCTTGAGGATGGTCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACTCTCC 7267 Query 178123 ATCTTGT 178129 | || || Sbjct 7266 ACCTCGT 7260 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| || || ||||| ||||| || || || Sbjct 6781 CAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCGGAT 6722 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || || || |||||||| || Sbjct 6721 ACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAACAG 6662 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || ||||| | ||||| | || || ||| | Sbjct 6661 CGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAACATT 6602 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 6601 CAGAAGGAGTCTACCCTTCACCTTGTT 6575 >seq6490 Length=90610 Score = 132 bits (146), Expect = 1e-25 Identities = 149/199 (75%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | |||||||| || || || || || || ||||||||||| |||| Sbjct 85087 AGGTCAAGATGC---AGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGG 85143 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || ||| ||||| ||||| |||||||| ||||| |||||||| || || || | Sbjct 85144 TCGAGTCCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTC 85203 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 | ||||||||||| || || || ||||| || || ||||| || ||||| | || ||| Sbjct 85204 CCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTT 85263 Query 178090 CCGATTATAACGTCCAAAA 178108 | || || ||| |||| || Sbjct 85264 CTGACTACAACATCCAGAA 85282 >seq6283 Length=33863 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||| ||||| || || |||||||| Sbjct 31067 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCAT 31126 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| |||||||| || || || || |||||||| || || || Sbjct 31127 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 31186 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || ||||| | || || | || || ||| |||| || Sbjct 31187 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 31246 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 31247 GGAGTCCACTCTCCACCTGGT 31267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203630304003148