Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6283 156 4e-33 seq6490 149 6e-31 seq6394 143 2e-29 >seq6283 Length=33863 Score = 156 bits (172), Expect = 4e-33 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| || Sbjct 31285 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 31226 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||||||||||| |||| Sbjct 31225 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 31166 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||| ||||| || Sbjct 31165 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAAGACTCGAC 31107 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 ||||| || || || ||||||||||| ||||| |||||| Sbjct 31106 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 31067 >seq6490 Length=90610 Score = 149 bits (164), Expect = 6e-31 Identities = 151/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| || |||||||| | || || ||||||||||| ||||| | Sbjct 85284 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 85225 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||||| ||||| || |||||||||| ||| || ||| ||| | Sbjct 85224 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTG 85166 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| ||||| ||||| | || ||||| |||||||| || ||||| ||| Sbjct 85165 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 85106 Query 41852 AAAATCTGCATGTT 41865 ||||||||||| || Sbjct 85105 AAAATCTGCATCTT 85092 >seq6394 Length=53086 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| ||||| ||| Sbjct 6558 CCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 6617 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || |||||||| || ||||| ||||||||||||||||||| |||| Sbjct 6618 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGA 6677 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || | | ||| | | | || || |||||| || Sbjct 6678 ATACCCTCCTTGTCC-TGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGAC 6736 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 6737 CTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || ||||| Sbjct 6786 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 6845 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 6846 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 6905 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| || | | | || ||| ||||| || Sbjct 6906 ATACCCTCCTTGTCCTGGATCTTGGACTT-GACATTGTCAATGGTATCGGAGGACTCAAC 6964 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 6965 CTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || |||||| Sbjct 7242 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 7301 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||||||||| ||||||| ||| Sbjct 7302 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 7361 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 7362 ATACCCTCCTTGTCCTGGATCTT 7384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462266195090400