Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq185 141 2e-28 seq15 96.9 7e-15 >seq185 Length=20677 Score = 141 bits (156), Expect = 2e-28 Identities = 315/466 (68%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| ||||||| || |||| | |||||| ||||| | || || || ||| Sbjct 17155 TTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTT 17096 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 | ||||||| |||||||| || ||| ||||||| || | | | || |||||| Sbjct 17095 GCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAG 17036 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 | ||| ||| || |||||||| || | || | | ||| | | || | || Sbjct 17035 CTTATCTCTCGTGATGAGGGTCTTCACACGGATTTTGCCTGCCTTCTTTTCTCTCACCT- 16977 Query 230353 CAGAACAAGCTACCATTCGAGACGGTCAAACAA---ATCATTACAGAAGCAGTTGAAAAC 230409 |||||| | || | || | | | || ||||| || || || || | | Sbjct 16976 --GAACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATT 16919 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || ||||||||| || || ||| |||| || ||| ||| | || ||||||||||| || Sbjct 16918 GAGAAGGAGTTCCTTACCGAGGCTCTTCCCTG-CGCTCTTCTCGGTATGAACGCTGACCT 16860 Query 230469 TATGG-GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGA 230527 ||| ||| || ||||| ||||| |||||||| || | || || || ||| |||| | Sbjct 16859 CATGAAGACC-TATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACA 16801 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | || ||||| | |||||||| | || |||||| ||| || ||| || |||| Sbjct 16800 AGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGAAAGA 16741 Query 230588 CCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGT 230633 ||||||||||||| |||||||| |||| || |||| | ||||||| Sbjct 16740 CCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAGGCTGGTGT 16695 >seq15 Length=363638 Score = 96.9 bits (106), Expect = 7e-15 Identities = 248/365 (68%), Gaps = 26/365 (7%) Strand=Plus/Plus Query 319313 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 319372 ||| |||||| ||||| |||||||||||||| || | ||| | || || Sbjct 115100 TGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCGGAGGCGCCGAGCT 115159 Query 319373 CGTAGTAACTC---GCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 319429 |||||||| | || || ||| | |||||| |||||||||| ||| || || || Sbjct 115160 CGTAGTAAGACTTGGCAGA---GGGGCACTTCTTGACGAACTCGGCCAGGTTACCACGGT 115216 Query 319430 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 319488 | ||| ||||| | | | ||||| |||||||| | | || || ||| ||| ||| Sbjct 115217 AACGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACATTGTCAAGG 115272 Query 319489 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 319544 || || |||||||| || ||||| | |||| || | |||| ||| ||||| Sbjct 115273 AAGCCAGAGTCGTGAGAGACAATGAT---CGAA--GTGC--AAGGAGAGTTGCAGAGGTA 115325 Query 319545 TTCAATCAA-CCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCA 319603 || |||| |||| | ||||| |||| | ||||||||| |||||||||||||||| Sbjct 115326 GTCC-TCAAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCA 115384 Query 319604 GTAGCTTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCG 319662 | | | | | || | ||||| ||| ||||| || ||||| ||||| || || Sbjct 115385 GAATATCGGGAGCCTCGAAGACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCA 115443 Query 319663 GAAAG 319667 ||||| Sbjct 115444 GAAAG 115448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819107233430