Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq26 183 4e-41 >seq26 Length=269500 Score = 183 bits (202), Expect = 4e-41 Identities = 634/977 (65%), Gaps = 18/977 (2%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 53763 |||| || |||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 167192 GCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGC-GCAGTACTCGATAATCTC 167134 Query 53764 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 53823 ||||||||| || || || ||||| | || | || |||||||| ||| || Sbjct 167133 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 167074 Query 53824 CGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTT 53883 |||||| || | ||||| || ||||||| || |||| | ||| | ||| || | Sbjct 167073 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATA 167014 Query 53884 CCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTGT 53940 ||| | ||||||| || || || | || || | | ||||| | || Sbjct 167013 CCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGACGT 166955 Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 54000 | | | | ||||| || || || || || |||| ||||| || || | || || Sbjct 166954 AAAGAGCC--TCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 166897 Query 54001 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 54060 ||| | | ||| || |||| | || || || ||||| || | ||| || ||||| || Sbjct 166896 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAG 166837 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || | || | ||| | | | | ||||| || || ||||| || || || Sbjct 166836 GGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAG 166777 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTT 54180 |||| | | | ||||| |||||||| |||| ||| |||| | | | ||||| || || Sbjct 166776 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 166717 Query 54181 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 54240 ||| || |||||||| | ||| | ||| |||||||| | || | || ||| |||| ||| Sbjct 166716 GTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAAT 166657 Query 54241 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 54300 ||| || || | ||| ||||| |||| |||||| || | ||||| ||| | | Sbjct 166656 ACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG-TGAG 166598 Query 54301 TGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 54359 | | ||||| || || || ||||| || ||||| | || || || | ||||||| Sbjct 166597 CGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 166538 Query 54360 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 54419 |||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 166537 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 166478 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 || || || || || || | ||||||||| ||||| || || | || || | | Sbjct 166477 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGA 166418 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGACA 54535 ||||||| || || | | | || | |||| || | || || || || ||| Sbjct 166417 GATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACA 166362 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||| | |||||||||||| | || || |||||| | | || || | ||| ||| Sbjct 166361 CGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGAT 166302 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACT 54655 |||||| || || || ||||| || | || ||||| || || || | ||| | Sbjct 166301 CTTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGCC 166242 Query 54656 GAGTTGAGTTTATCCTT 54672 |||| || | ||||| Sbjct 166241 GAGTCCAGCTCTTCCTT 166225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718920831280