Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq185 282 4e-71 seq44 129 6e-25 seq68 122 9e-23 seq33 118 1e-21 >seq185 Length=20677 Score = 282 bits (312), Expect = 4e-71 Identities = 580/855 (68%), Gaps = 18/855 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || |||||| ||| |||||| | ||||| || | |||| || || |||| |||||| Sbjct 17596 GATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGAGATCTGGCAAATGTAC 17537 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 |||||||||||||| || |||||||||| ||||||| | ||||| |||||||| | Sbjct 17536 AAAAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACCTTTCCAAGGATCTTCAC 17477 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||| | ||| ||| | | || | |||||| ||||| || ||||| Sbjct 17476 GACTGGAACAACCGCATGACTAAGGATGAACAGTTCTTCATCTCTCACGTTCTTGCCTTC 17417 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||||||| ||||| || || |||||||| |||||||||||||| || ||||| Sbjct 17416 TTCGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTT 17357 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | | || || || ||||||||||| || |||||| ||||||||| | |||||| Sbjct 17356 CAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCG 17297 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT----GCG-CTCTTCGGAGGAGA-AGCTC 116941 || | ||| || || || ||||| ||| | | | || || | | | | | ||| Sbjct 17296 GAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCCTGCTCAGCGCACATACCTC 17237 Query 116942 CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTG 117001 || |||||||| || || || || ||| | |||||||| ||||| ||| Sbjct 17236 ------TTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTG 17183 Query 117002 CGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTC 117061 ||||| | | || ||| | | || | |||| || || |||||||| || || Sbjct 17182 AAGTGGATTACTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTT 17123 Query 117062 GAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTC 117121 ||||| ||||||| || || ||| ||| |||| || ||||| || || || | Sbjct 17122 GAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTG 17063 Query 117122 ATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGAC 117181 |||||||| |||||||| ||||||||| ||||| | || |||||||| || || Sbjct 17062 ATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGAT 17003 Query 117182 TTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAG 117241 |||||||| | || ||| || || | || || ||| | | || ||| Sbjct 17002 TTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCCAGCAAGCAGTTGATCCAGGAC 16943 Query 117242 ATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG- 117300 ||| |||| || || |||| ||| ||| || ||||| ||||| || || || |||| Sbjct 16942 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCC-CTGCGC 16884 Query 117301 TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCT 117360 ||| || || | || || ||| | || |||||||||||||||||| | || Sbjct 16883 TCTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCT 16824 Query 117361 GCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAA 117420 ||| ||| || | || |||| ||||| | ||||||| | ||||| ||| | Sbjct 16823 TCTGGTCGCTCTCGGTAACGACAAGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGA 16764 Query 117421 CCTCATCT-CCTTGG 117434 ||||| |||||| Sbjct 16763 GAACATCTCCCTTGG 16749 >seq44 Length=213652 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| |||| ||||| | || Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| |||||| ||||||| Sbjct 152166 GATACCATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 152108 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| || ||||| |||||||| Sbjct 152107 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAA 152048 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || || || || Sbjct 152047 CATCCAGAAGGAGTCCACTCTCCACCTGGT 152018 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| |||| || || || | Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| ||| || | ||||| ||||| || ||| ||||||| Sbjct 152622 GACACTATCGACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 152564 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 152563 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 152504 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| | || || || || || Sbjct 152503 CATTCAGAAGGAGTCTACTCTCCACCTTGT 152474 Score = 122 bits (134), Expect = 9e-23 Identities = 139/187 (74%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||| ||||| ||||||||| |||| || || || |||| | | | | | ||||| Sbjct 152888 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 152829 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| |||||| |||||||||| || || || | ||| |||| Sbjct 152828 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 152769 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | ||||||||| |||||||||||| ||||||||| | || || | Sbjct 152768 AGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTACTCTCC 152709 Query 40892 ATCTAGT 40898 | || || Sbjct 152708 ACCTCGT 152702 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || ||||| | | Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||| || ||| |||||||| Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | || || ||| ||||||||| Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAAC 152275 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || |||||| |||| || || || || Sbjct 152274 ATTCAAAAGGAGTCCACCCTTCACCTTGT 152246 >seq68 Length=156602 Score = 122 bits (134), Expect = 9e-23 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||||||| | || ||||| | | |||| | | Sbjct 123893 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 123834 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| || ||| ||||||| || || || Sbjct 123833 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 123775 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||| Sbjct 123774 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 123715 Query 40878 GGAGGCCACGCTGCATCTAGT 40898 |||| |||| || || || || Sbjct 123714 GGAGTCCACTCTCCACCTGGT 123694 >seq33 Length=249776 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || |||||| | || ||||| | Sbjct 209052 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 209111 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| || || | ||||| |||||||| ||| |||| Sbjct 209112 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 209170 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 209171 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 209230 Query 40866 CAACATCCAGAAGG 40879 |||||||||||||| Sbjct 209231 CAACATCCAGAAGG 209244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216875073360