Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq44 125 6e-24 seq68 102 7e-17 seq33 96.9 3e-15 >seq44 Length=213652 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || ||||||||||| ||| | ||||| ||| || ||||| Sbjct 152479 GTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTG 152538 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| ||||||||||| || || || || ||||||||||| || || Sbjct 152539 CTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTT 152598 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 | || || | |||| ||||| | | ||| ||||||| || | || ||||| || Sbjct 152599 TGACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGT 152658 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || || ||||||||||| Sbjct 152659 CAGAGTCTTGACGAAAATCTGCAT 152682 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| || | || || |||||| ||||| || ||| Sbjct 152258 GTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCCTCAAGCTGCTTACCA 152317 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || || |||||||| || || || || ||||||||||| ||| || || Sbjct 152318 GCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 152377 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| |||| ||||||||| | ||| | || ||||||||||| || Sbjct 152378 ACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTC 152437 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 152438 TTGACGAAAATCTGCAT 152454 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || || || ||||| Sbjct 152018 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCC 152077 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| ||||||||||| || || || || ||||||||||| Sbjct 152078 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGG 152137 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||||| || | || || Sbjct 152138 ATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTT 152197 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || |||||||| Sbjct 152198 CCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || ||||||||||| ||| | ||||| |||||| ||||| Sbjct 152707 GTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTG 152766 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || |||||| | || || |||||||| || || || || ||||||||||| || || Sbjct 152767 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 152826 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||| || | | ||| ||||||| ||| | || |||||||| Sbjct 152827 GGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 152886 >seq68 Length=156602 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| || || ||||| |||||| Sbjct 123694 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCA 123753 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || ||||| || || || || || ||||||||||| Sbjct 123754 AGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGG 123813 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||||||||| | ||| | || || Sbjct 123814 ATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTA 123873 Query 118710 CCGGTCAGAGTTTTTACAAAA 118730 || ||||| || || || ||| Sbjct 123874 CCCGTCAGGGTCTTGACGAAA 123894 >seq33 Length=249776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| |||||| ||||| || |||||| | || Sbjct 209242 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 209183 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| || || || || | ||| Sbjct 209182 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 209123 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| ||||||||| | ||| | ||| || || || || || || || ||| Sbjct 209122 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 209063 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 209062 ATCTGCAT 209055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433828491281812