Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq26 352 3e-92 seq185 172 5e-38 seq44 116 3e-21 seq33 96.9 3e-15 >seq26 Length=269500 Score = 352 bits (390), Expect = 3e-92 Identities = 1202/1858 (65%), Gaps = 56/1858 (3%) Strand=Plus/Minus Query 22144 GGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGA 22203 ||| || ||||| ||||| |||||||| ||||| | |||||| | ||| || || Sbjct 168069 GGTACGCAGATAGTACATACCCGTCTTGAGACCAAGCTTCCAACCCGCAAAGTGCATGCT 168010 Query 22204 CGTCAATTTT--CCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261 || ||| || ||||| | || || |||| | || ||||||||| |||||| Sbjct 168009 GGT-AATCTTGCCCATAGTTGGGTCCTTC-ATGTGAATGTTCAACGACTGAGACTGATCA 167952 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 ||||| || || || || || ||||| | | | |||||| || || ||||| || Sbjct 167951 ATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGAAATCTCCCAAACA 167892 Query 22322 GTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG--ATCCTCTGGACGGACCCGT 22379 ||||||||||| | |||| || ||| || | | | || |||||| || |||| Sbjct 167891 GTCTTGTACAGAGACTTGATGTCCGCCGGAAT--ACTGGGAATGTTCTGGATAGAACCGT 167834 Query 22380 TATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAA---- 22435 | | ||||| || || || | || ||||| ||| | |||||| Sbjct 167833 TGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCAA----GGTCAACAAGG 167778 Query 22436 TCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 || | || | |||| || || || ||||| || | ||| || ||||| |||||| Sbjct 167777 TCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAA 167718 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 ||||| || ||| | || ||||| | || ||||| ||||| ||||| | || || || Sbjct 167717 ATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCA 167658 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 || ||||| ||||||| || |||||||| | | |||| || ||| | ||| Sbjct 167657 GTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTC 167598 Query 22616 AGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAAC 22675 || ||| |||||||| || ||||| |||| ||||||| ||| | || | Sbjct 167597 AGAGAGTTCCAATCCCACAGGTCACTGGGCGTGACAT---CCCACATGTCGAACTGAAGG 167541 Query 22676 ACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGT 22735 | || || | || ||| |||||||| ||| | ||| | | || || | Sbjct 167540 ATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATA 167481 Query 22736 TCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATT-- 22793 ||||| ||||||| || ||| || || ||||||||||| | |||||| | | Sbjct 167480 TCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGA 167421 Query 22794 CG-GCGGCGGC-GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACC 22851 || || |||| ||| || | ||||| || | || ||| || || |||| ||| Sbjct 167420 CGAGCCTCGGCAGAC----TCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACC 167365 Query 22852 CTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTT----GCCTCGGGCA 22907 ||| || || | ||| || || |||| || || || || |||||| | Sbjct 167364 CTGGACACCAACACCAATGGGACGGTGACGCATGTTG----CTGTTCCGGGCCTCGACAA 167309 Query 22908 AAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNN 22967 ||| || ||| ||| || | | ||||||||| | | |||| || || | Sbjct 167308 CAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACAT 167249 Query 22968 NNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTA--CAACAAACTTGTTGACGGCG 23023 | |||||||| | | | |||| ||||||| || || Sbjct 167248 CGTGCAGCTTCTGGAAGTCGTAGCAGTT-GTTGGTGTAGTCAACAAAGGCAGGGAGAGCA 167190 Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGG 23081 | ||| || | ||||| || |||||||| || ||| || |||||| | ||| || | Sbjct 167189 AGCGACGCCAAGTTGCACACAGCCACCTCATCA--GGAGCGCAGTACTCGATAATCTCAG 167132 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | || || ||| || || || |||| || ||||||| || || || ||||| Sbjct 167131 TGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGT 167072 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 ||||||||| | |||| | || | || ||||| ||| | || | || || || Sbjct 167071 GATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACC 167012 Query 23202 ACATAGTCTGAGCGTG------AACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTT 23255 ||| ||||||| | || ||| | ||||| ||||| ||||||||| Sbjct 167011 ACAGCTTCTGAGCCTTGATGGTAAGACGGC-CACGT-----CCTTCCCGCTCGTACTTGA 166958 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||| | || |||||||| |||||||||| || |||| ||| || | | | || | Sbjct 166957 CGTAAAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGC 166898 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 ||||||| |||| || || ||||| || |||| || | ||| || ||||| | Sbjct 166897 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 166838 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | || ||||| ||||| ||||| | |||||| || ||| |||||| | || | Sbjct 166837 GGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 166778 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || ||||| || || ||||||||||| ||||||| |||||| || || || | || Sbjct 166777 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 166718 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | || || ||||||||||||||||| || ||||| ||| | || | ||||| || || | Sbjct 166717 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAA 166658 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 |||||| || | ||| ||| || | | ||||| | || || | |||| Sbjct 166657 TACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAG 166598 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 ||| || ||| || || || || || || ||||| || || || || || || | Sbjct 166597 CGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 166538 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 |||| || ||||| |||||||| || | | |||||||| || ||||| | || | | Sbjct 166537 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 166478 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 || ||| |||| ||| || || || |||||| || ||| | ||||||| | Sbjct 166477 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGA 166418 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 ||||||| || || | | |||| | || || ||||||| || || |||| Sbjct 166417 GATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACACGCA 166358 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | ||||||| ||||| | |||||| | ||| | || |||| || || || | || Sbjct 166357 TAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTT 166298 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || |||||||| || | |||||| |||||||| || | || |||||||| Sbjct 166297 CCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGCCGA 166240 >seq185 Length=20677 Score = 172 bits (190), Expect = 5e-38 Identities = 490/745 (66%), Gaps = 15/745 (2%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||||||||| || || || || ||||||| ||| || | ||| Sbjct 17554 GAGATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAC 17495 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || |||||||| ||| ||| | || || || | | ||| || || | Sbjct 17494 CTTTCCAAGGATCTTCACGACTGGAACAACCGCAT-GACTAAGGATGAACAGTTCTTCAT 17436 Query 57687 C----ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 | |||| | || || |||||||| || || ||||||||||||||||| |||||||| Sbjct 17435 CTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGTCGA 17376 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | || || || || || | | || || | ||||| ||||| || || | Sbjct 17375 GCGTTTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGATCAT 17316 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 || || ||| | || || || | ||| || | || || || || ||| | ||||| Sbjct 17315 GATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCC 17256 Query 57863 CGACGAG-AAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAG 57920 | || || || || |||||||| || || || || ||| || ||||| ||| Sbjct 17255 TGCTCAGCGCACATA-CCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCC-GCAAG 17198 Query 57921 GCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTA 57977 || || ||| | | || ||||| | | || || | || || || || | || Sbjct 17197 GCCGACTGGGCCCTGAAGTGGAT---TACTGACAAGGAGTCGACTTTTGCTCAGCGTCTT 17141 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 | || |||||||| || || ||||| ||||| || || ||||| | || || ||| Sbjct 17140 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGG 17081 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 || || || || |||||||||| |||| || ||||||| | || || || || Sbjct 17080 CTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGAT 17021 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 |||||||| || || |||||||| ||||| | | ||||||| | ||| || | Sbjct 17020 GAGGGTCTTCACACGGATTTTGCCTGCCTTCTTTTCTCTCACCTGAACAACCGCCCCAGC 16961 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | ||| |||||| ||||| || || |||| || || || ||||| | ||| Sbjct 16960 AAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACC 16901 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || || | |||||||||||| ||| | ||| | || || ||| Sbjct 16900 GAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGAG 16841 Query 58278 TTTGTTGCCGACAGACTTTTGCTCG 58302 || || |||||| | ||| || ||| Sbjct 16840 TTCGTCGCCGACCGTCTTCTGGTCG 16816 >seq44 Length=213652 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || ||||| |||| ||||| | || Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || ||| | ||||||||| || | || || ||||| Sbjct 152622 GACACTATCGACAACGTCAAGTCAAAGA-TCCAGGACAAGGAGGGTATTCCCCCGGACCA 152564 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | ||||| || | ||| || || Sbjct 152563 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 152504 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || ||||| || || || || Sbjct 152503 CATTCAGAAGGAGTCTACTCTCCACCTTGTCCT 152471 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| || || || ||||| |||| || || | ||| Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | ||||| ||| || | | ||||||||| || | || || ||| Sbjct 152166 GATACCATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGAC 152110 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || || ||||| || ||| |||| ||| || || || || Sbjct 152109 CAGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTAC 152050 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || ||||| || Sbjct 152049 AACATCCAGAAGGAGTCCACTCTCCACCTGGTTCT 152015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| ||||| || || ||| | || || || |||| Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| || | || || |||||| Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| || || |||||||| || ||| | ||| | | || | || | || || Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACG-CTCT--CGGACTAC 152278 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || || || ||||| || || || | ||| | || |||| Sbjct 152277 AACATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGTA 152226 >seq33 Length=249776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 209052 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 209111 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 209112 TCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 209171 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 209172 CAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGA 209209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764388479120