Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq26 196 6e-45 >seq26 Length=269500 Score = 196 bits (216), Expect = 6e-45 Identities = 639/978 (65%), Gaps = 20/978 (2%) Strand=Plus/Minus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 65794 |||| || |||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 167192 GCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGC-GCAGTACTCGATAATCTC 167134 Query 65795 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 65854 ||||||||| || || || ||||| | || | || |||||||| ||| || Sbjct 167133 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 167074 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 |||||| || | ||||| || ||||||| || |||||| ||| | ||| || | Sbjct 167073 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATA 167014 Query 65915 CCAGACGACTC-GAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTG 65970 ||| | | || ||||||| || || || | || || | | ||||| | | Sbjct 167013 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGACG 166956 Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 || | | | || || || || || || || |||| ||||| || || | || | Sbjct 166955 TAAAGAGCC--TCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGC 166898 Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 |||| | | ||| || |||| | || || || ||||| || | ||| || ||||| | Sbjct 166897 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 166838 Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 | || | || ||||| | | | | ||||| || || ||||| || || | Sbjct 166837 GGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 166778 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 ||||| | | | |||| |||||||| |||| ||| ||||| | | | ||||| || | Sbjct 166777 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 166718 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270 |||| || |||||||| | ||| | ||| |||||||| | || | || ||| |||| || Sbjct 166717 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAA 166658 Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA 66330 |||| || || ||||| ||||| |||| |||||| || | ||||| ||| | | Sbjct 166657 TACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG-TGA 166599 Query 66331 TTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 66389 | | ||||| || || || ||||| || ||||| | || || || | |||||| Sbjct 166598 GCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCA 166539 Query 66390 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 66449 ||||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 166538 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGC 166479 Query 66450 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 66509 || || || || || || | ||||||||| ||||| || || | || || | Sbjct 166478 TGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 166419 Query 66510 AGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGAC 66565 |||||||| || || | | | || | |||| || | || || || || || Sbjct 166418 AGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAAC 166363 Query 66566 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 66625 |||||| | |||||||||||| | || || |||||| | | || | | ||| || Sbjct 166362 ACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGA 166303 Query 66626 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 66685 | |||||| || || || ||||| || | || ||||| || || || | ||| | Sbjct 166302 TCTTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGC 166243 Query 66686 CGAGTTGAGTTTATCCTT 66703 ||||| || | ||||| Sbjct 166242 CGAGTCCAGCTCTTCCTT 166225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169829995240