Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq26 206 4e-48 seq185 163 4e-35 >seq26 Length=269500 Score = 206 bits (228), Expect = 4e-48 Identities = 639/972 (66%), Gaps = 20/972 (2%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCA 79679 || |||| || || || || ||||||| || | | ||| || | || || |||||||| Sbjct 167186 GACGCCAAGTTGCACACAGCCACCTCATCAGGAGC-GCAGTACTCGATAATCTCAGTGCA 167128 Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739 ||||| || ||| ||||| | || | || |||||||| ||| || ||| Sbjct 167127 AAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATC 167068 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || | ||||| || ||||||| || |||||| ||| | ||| || | ||| | Sbjct 167067 CTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACA- 167009 Query 79800 GACTC-GAGCCTTTATTATA-GACTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTATATA 79855 | || ||||||| || || ||| | || || | | ||||| ||| ||| | | Sbjct 167008 GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGACGTAAAGA 166950 Query 79856 ATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCA 79915 | || || || || || || ||| | || ||||| || |||| || ||||| | Sbjct 166949 GCC--TCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGA 166892 Query 79916 ACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 79975 | ||| || || | | || || || ||||| || | ||| || ||||| || || | Sbjct 166891 GGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAA 166832 Query 79976 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 80035 || | ||| | | | | |||||| || || ||||| || || |||||| Sbjct 166831 GGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACT 166772 Query 80036 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTC 80095 | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||||| | Sbjct 166771 CAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTAC 166712 Query 80096 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 80155 | |||||||| | ||| | ||| |||||||| | || | || ||| |||| |||||| | Sbjct 166711 CACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGT 166652 Query 80156 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 80214 | || ||||| ||||| |||| |||||| || | ||||| ||| | | | | Sbjct 166651 TCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG-TGAGCGTTG 166593 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 ||||| || || || ||||| || ||||| | || || || | ||||||||||| Sbjct 166592 AGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATA 166533 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 || || || || || || |||||| | | || ||| ||| | || | || Sbjct 166532 CCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGG 166473 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | ||||||||| ||||| || || | || |||| |||||| Sbjct 166472 GTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGATTG 166413 Query 80395 TACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGAATTCCTACCGCGACACGCAT 80450 || || || | | | || | |||| || | || || || || |||||||| Sbjct 166412 TAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACACGCAT 166357 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 | |||||||||||| | || || |||||| || | || | | ||||||| |||| Sbjct 166356 AATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTTC 166297 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 80570 || || || || ||||| || | || ||||| || || || | ||| |||||| Sbjct 166296 CAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGCCGAGTC 166237 Query 80571 GAGTTTATCCTT 80582 || | ||||| Sbjct 166236 CAGCTCTTCCTT 166225 >seq185 Length=20677 Score = 163 bits (180), Expect = 4e-35 Identities = 386/580 (67%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||| |||||||| || | | || || |||||||| || || | Sbjct 16995 CAGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAA 17054 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | |||||||| ||||| || ||||| ||||| | ||||| |||||| Sbjct 17055 CCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAG 17114 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || ||||| ||||||||||| | || || || | | | ||||| Sbjct 17115 ATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTA 17174 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| | ||||| |||||||| | || || || || || ||||| || Sbjct 17175 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTG 17234 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACA 50254 ||||| || | | | | || |||| || || || |||| ||||| ||| Sbjct 17235 AAGAGGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGA--GTACG 17292 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| |||||||| || || ||||| || |||||||| || | || || | | Sbjct 17293 TCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGA 17352 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 |||| || || | | | || || || | || || || || || || |||||| ||| | Sbjct 17353 TCTGAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGCGG 17412 Query 50375 CAAAAAACGCCAATACATG---TTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | || || || | || || | | || |||| || || | | | || |||| Sbjct 17413 CGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGTTCATCCTTAGTCATGCGGTTGTTCC 17472 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | || | | ||| || || | || | || || | ||||| || || ||||| |||| Sbjct 17473 AGTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCT 17532 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 |||| ||||| | |||||| || || || | ||| ||||| Sbjct 17533 TTTTGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 17572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265558812040