Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq26 183 4e-41 seq185 140 4e-28 >seq26 Length=269500 Score = 183 bits (202), Expect = 4e-41 Identities = 624/961 (65%), Gaps = 16/961 (2%) Strand=Plus/Minus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| || |||| || || || || ||||||| || | || || | ||||| ||| Sbjct 167192 GCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCA 167133 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 |||||||| || || || ||||| | || | || |||||||| ||| || Sbjct 167132 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAG 167073 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| || | || || || ||||||| || |||||| ||| | ||| || | | Sbjct 167072 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATAC 167013 Query 71878 CAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA-TTGT-GTA 71934 || | | || ||||||| || || | | ||| | ||||| ||| ||| Sbjct 167012 CACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGACGTA 166954 Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 | | | || || || || || || || | || ||||| || || || || ||| Sbjct 166953 AAGAGCC--TCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCAC 166896 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | ||| || || | | | || || ||||| || | ||| || ||||| || Sbjct 166895 ATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGG 166836 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || | ||| | | | | |||||| || || ||||| || || ||| Sbjct 166835 GCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGG 166776 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 ||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || ||| Sbjct 166775 AACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTG 166716 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || |||||||| | ||| | ||| |||||||| | || | || ||| |||| |||| Sbjct 166715 TTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATA 166656 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 || || || | ||| ||||| |||| |||||| || | ||||| ||| | | | Sbjct 166655 CCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG-TGAGC 166597 Query 72295 GAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 72353 | | ||||| || || || ||||| || ||||| | || || || | |||||||| Sbjct 166596 GTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATA 166537 Query 72354 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 72413 ||| || || ||||| || ||| |||||| | | || ||| ||| | || | | Sbjct 166536 GATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTG 166477 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 | || || || || || | ||||||||| ||||| || || | || |||| || Sbjct 166476 AGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAG 166417 Query 72474 ATTGTACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGTATTCCTACCGCGACAC 72529 |||||| || || | | | || | |||| || | || || || || |||| Sbjct 166416 ATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACAC 166361 Query 72530 GCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATT 72589 |||| | ||| |||||||| | || || |||||| || | || | | ||| ||| Sbjct 166360 GCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATC 166301 Query 72590 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 72649 |||||| || || || ||||| || | || ||||| || || || | ||| ||| Sbjct 166300 TTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGCCG 166241 Query 72650 A 72650 | Sbjct 166240 A 166240 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| || |||| | ||||| | ||||| ||||||||||| Sbjct 168110 TCCTGGTCAACAGTGAACTGGATAGGAGCAGCAGCGGCCTGGGTACGCAGATAGTACATA 168051 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || ||||| || |||| || ||| ||||| || || | ||| |||| | Sbjct 168050 CCCGTCTTGAGACCAAGCTTCCAACCCGCAAAGTGCATGCTGGTAATCTTGCCCATAG-T 167992 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || |||||||| |||| ||||||| ||||| || ||||| || | ||| || Sbjct 167991 TGGGTCCTTCATGTGAATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGC 167932 Query 70968 AGCCAT 70973 |||||| Sbjct 167931 AGCCAT 167926 >seq185 Length=20677 Score = 140 bits (154), Expect = 4e-28 Identities = 382/580 (66%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||| ||| ||||||||||| | | || | |||||||| || || | Sbjct 16995 CAGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAA 17054 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | |||||||| ||||| || || || ||||| | ||||| |||||| Sbjct 17055 CCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAG 17114 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGT 42241 || || || || || || ||||||| ||| | || || || || | | ||||| Sbjct 17115 ATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTA 17174 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | ||||| |||||||| | || || || || || ||||| || Sbjct 17175 ATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTG 17234 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACA 42359 ||||| || | | | | || |||| || || || |||| ||||| ||| Sbjct 17235 AAGAGGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGA--GTACG 17292 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || |||||||| || || ||||| || |||||||| || | ||| || | | Sbjct 17293 TCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGA 17352 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 ||| || || | | | || || || | || || ||||| || || |||||| ||| | Sbjct 17353 TCTGAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGCGG 17412 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCC 42536 | || || || | || || || || | | ||| ||| || | || |||| Sbjct 17413 CGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGTTCATCCTTAGTCATGCGGTTGTTCC 17472 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | || | | ||| || || | || | || || | ||||| || || || || |||| Sbjct 17473 AGTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCT 17532 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAA 42636 |||| ||||| | |||||| || || || | || ||||| Sbjct 17533 TTTTGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAA 17572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136171484360