Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq185 217 2e-51 seq26 104 3e-17 >seq185 Length=20677 Score = 217 bits (240), Expect = 2e-51 Identities = 397/579 (69%), Gaps = 7/579 (1%) Strand=Plus/Minus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| ||| || || || ||| |||||||||||||||| ||||||| || ||| Sbjct 17572 TTCCCTATCAAGTACCACGAGATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGG 17513 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||| | || || |||||||| || |||| ||| | | || ||||| | Sbjct 17512 ACCGCCGAGGAGATTGACCTTTCCAAGGATCTTCACGACTGGAACAACCGCATGACTAAG 17453 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| | || || || ||| || | |||||||| |||| ||| || || || || Sbjct 17452 GATGAACAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTT 17393 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 ||||| || || | || |||||| ||| | || || || | ||||| Sbjct 17392 AACGAGAACTTGGTCGAGCGTTTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTC 17333 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 ||||| ||||| |||||||| |||||| | |||||||| | ||||||| ||||||||| Sbjct 17332 TACGGTTTCCAGATCATGATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGAC 17273 Query 125298 ATGTACATTCGCGA---TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTG 125354 | |||||| || | | || || | | || ||||| ||||| || ||||| | Sbjct 17272 ACCTACATTAAGGAGCCTGCTCAGCGCACATAC---CTCTTCAACGCCATTGACACTATT 17216 Query 125355 CCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG 125414 || | || || ||||| | |||| | |||||| |||| | |||| | Sbjct 17215 CCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAGTCGACT 17156 Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 | || | | || || || |||||||| || ||||| |||||||| || ||| |||| Sbjct 17155 TTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTT 17096 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || ||||||| ||||| ||||| || | |||||||| |||| | |||||| Sbjct 17095 GCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAG 17036 Query 125535 TTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||| ||||| || ||||| || ||| || |||||| Sbjct 17035 CTTATCTCTCGTGATGAGGGTCTTCACACGGATTTTGCC 16997 >seq26 Length=269500 Score = 104 bits (114), Expect = 3e-17 Identities = 310/473 (66%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || ||| | ||| | ||| |||| || |||||||| || Sbjct 166705 CAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGAT 166764 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | || || ||| || || ||| || || | || Sbjct 166765 GTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATTCGCGCTCGCGAT 166824 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||| || ||| | || ||||||||||||||||| || | | ||| | Sbjct 166825 TTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAA 166884 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || || || || | ||||| | || || || ||| Sbjct 166885 TGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGTTACGGTGAGGAATTT 166944 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| ||||||| || || || ||| || | || | || | Sbjct 166945 GAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGTGGCCGTCTTACCA-TCAAGGCTC- 167002 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | || || || |||||| |||||||| | || | ||| | | Sbjct 167003 AGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAGACTGGTAACCCTTTCATGTTGT 167062 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | || ||||| || ||||| || |||| || || | |||| Sbjct 167063 ACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACTATTCGCAGTTCCA 167122 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || ||||| || ||| | |||||| | |||| || ||| ||| || ||| Sbjct 167123 ACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTGGCTGTGTGC 167175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055855970360