Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq15 176 7e-40 seq2 96.9 5e-16 >seq15 Length=363638 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 52762 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCCGCTA 52704 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| ||||||||| | |||| || |||| || |||| Sbjct 52703 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGCCATGATCTACGAGGAGA 52644 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | |||| |||||| || || || | ||| ||| || ||| || | Sbjct 52643 CCCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACGCTGTCACCTACACTG 52584 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| | || | ||||| || | || | |||| Sbjct 52583 AGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCCCTCAAGAGACAAG 52524 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 52523 GCCGCACTCTGTACGGTTTCGGTGGTTAA 52495 >seq2 Length=1009776 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || || |||||||| || | Sbjct 741022 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATTACCAAGCCCGCCA 741080 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | || ||||| |||||||||||||| ||||||||| | |||| Sbjct 741081 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 741122 Score = 89.7 bits (98), Expect = 8e-14 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16541 TATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTC 16600 || ||||||| || | |||| | |||| |||||| || || || | ||| ||| || Sbjct 741197 TACGAAGAGACCCGCGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACGCTGTC 741256 Query 16601 CACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTG 16660 ||| || |||||||| || || |||||||||||||| | || | ||||| || | Sbjct 741257 ACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCGCTTGACGTTGTCTACGCTCTC 741316 Query 16661 AAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || || || ||||||| |||||||||| || ||||| Sbjct 741317 AAGCGCCAGGGCCGTACTCTTTATGGTTTCGGTGGTTAA 741355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074869935173