Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq26 196 6e-45 >seq26 Length=269500 Score = 196 bits (216), Expect = 6e-45 Identities = 639/978 (65%), Gaps = 20/978 (2%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62950 |||| || |||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 167192 GCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGC-GCAGTACTCGATAATCTC 167134 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||||||| || || |||||||| | || | || |||||||| ||| || Sbjct 167133 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 167074 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||| || | ||||| || ||||||| || |||||| ||| | ||| || | Sbjct 167073 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATA 167014 Query 63071 CCAGACGACTC-GAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTA--TAGTG 63126 ||| | | || ||||||| || || || | ||||| | | ||||| | | Sbjct 167013 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCC-CGCTCGTACTTGACG 166956 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 || | | | || || || || || || || |||| ||||| || || | || | Sbjct 166955 TAAAGAGCC--TCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGC 166898 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| | | ||| || |||| | || || || ||||| || | ||| || ||||| | Sbjct 166897 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACA 166838 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 | || | || | ||| | | | | ||||| || || ||||| || || | Sbjct 166837 GGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAA 166778 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||||| | | | ||||| |||||||| |||| ||| ||||| | | | ||||| || | Sbjct 166777 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 166718 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || |||||||| | ||| | ||| |||||||| | || | || ||| |||| || Sbjct 166717 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAA 166658 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 63486 ||||||| || |||| ||||| |||| |||||| || | ||||| ||| | | Sbjct 166657 TACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGG-TGA 166599 Query 63487 TTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 | | ||||| || || || ||||| || ||||| | || || || | || ||| Sbjct 166598 GCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCA 166539 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 |||||||| || || || || || |||||| | | || ||| ||| | || | Sbjct 166538 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGC 166479 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63665 || || || || || || | ||||||||| ||||| || || | || || | Sbjct 166478 TGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 166419 Query 63666 AGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGAC 63721 |||||||| || || | | | || | |||| || | || || || || || Sbjct 166418 AGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAAC 166363 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63781 |||||| | |||||||||||| | || || |||||| | | || | | ||| || Sbjct 166362 ACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGA 166303 Query 63782 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63841 | |||||| || || || ||||| || | || ||||| || || || | ||| | Sbjct 166302 TCTTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGC 166243 Query 63842 CGAGTTGAGTTTATCCTT 63859 ||||| || | ||||| Sbjct 166242 CGAGTCCAGCTCTTCCTT 166225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944388950760