Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq26 369 1e-96 seq185 91.5 4e-13 >seq26 Length=269500 Score = 369 bits (408), Expect = 1e-96 Identities = 1171/1792 (65%), Gaps = 44/1792 (2%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449 || |||| ||||| |||| | ||| ||||| |||| | |||| | ||||| || Sbjct 166279 TTTGGATTCAAGACCCTGGAAAGATCTTACCT-TCTCAAGCTTGATGGCAAGATTGTCGA 166337 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || ||||| ||| | |||||||||||| | |||||| | ||||||| Sbjct 166338 GCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCG 166397 Query 363510 CGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 | | ||||| || || || | | || || | ||||| |||||| | || || Sbjct 166398 TGTTCTGGAAACTTACAATCTCATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCTACCC 166456 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | | | || ||| | ||||| ||||| | || | ||||||| Sbjct 166457 TCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGG 166516 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||| ||||||| ||| || || |||| |||||| | || ||||||| | Sbjct 166517 AGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGG 166576 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTAC---ATTCGC 363744 | || || || ||| | | || || || | | ||||| | | ||| | ||| | Sbjct 166577 CGGGTGGTATCGGTCTCAACGCTC-ACCGTATCCGTGCT---ACCGGTTCCTATATTGCC 166632 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || |||||| || | ||||| ||||| ||||| || | || ||||| Sbjct 166633 GGCACCAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCT 166692 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | |||||||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 166693 CGTTACGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCG 166752 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || || ||| | |||||||| ||||| |||||||| ||| || || ||||| | Sbjct 166753 TGGCACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATT 166812 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 || || || ||| ||||| ||| || ||| | | || || |||||||| || ||| Sbjct 166813 CGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAG 166872 Query 363985 GCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | | | | | ||| | ||| | ||||| |||| || || || | | ||| | Sbjct 166873 --AAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGTT 166930 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 ||||| || | || ||||| |||| ||||| || ||| ||| | ||| | Sbjct 166931 ACGGTGAGGAATTTGAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGTGGCCGTCTTA 166990 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || |||||||| |||| ||| || |||| | |||| ||||| || | || Sbjct 166991 CCATCAAGGCTCAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAGACTGGTA-AC 167049 Query 364163 CCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||| | ||||||||||| ||| |||||||||||| |||||| || |||| || || Sbjct 167050 CCTTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACT 167109 Query 364222 ATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 |||| |||| |||||| || || |||||||| || ||| |||||| || ||| || Sbjct 167110 ATTC-GCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTGGC 167168 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----------AAAAGATGGTA 364330 || || ||| | |||||| | || || || || ||||| || | || || Sbjct 167169 TGTGTGCAACTTGGCGTCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGCTA 167228 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGG 364390 | ||| |||| | || | || || ||| | || | |||| | || Sbjct 167229 C----GACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTA 167284 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCC 364450 | || || ||| | || || || || ||| | || |||||||| || | Sbjct 167285 TCATTGATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGCAACATGCGTCACCGTC 167344 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | |||||| ||||||| ||||| || || || | || || || ||| | |||| Sbjct 167345 CCATTGGTGTTGGTGTCCAGGGTCTGGCCGATGCCTTCCTGGCCCTTCGCATGCCTTTTG 167404 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || | || |||||| || || ||| ||||||| || || || || || || Sbjct 167405 AGTCTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCTC 167464 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 || ||||| || ||| | || | || | ||||| || || ||||| || | Sbjct 167465 TGGAGGCTTCATGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGCTCTC 167524 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 || | || ||||| | | ||||| || | ||| |||||||||| || || ||| Sbjct 167525 CTGTCTCTCAGGGTATCCTTCAGTTCGACATGTGGGATGTCACGCCCAGTGACCTGTGGG 167584 Query 364691 ACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACA 364749 | ||| | | || | | | | ||||| || | ||| ||||||||| || | Sbjct 167585 ATTGGAACTCTCTGAAGGAGC-AGATTAAGCAGAACGGTGTTCGCAACTCGCTGCTCCTG 167643 Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 |||||||||||||| || || ||| | ||||| || || ||||||||||||||||| || Sbjct 167644 GCGCCCATGCCCACTGCGTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCT 167703 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA---T 364866 | || || |||| ||||| || | | || || || | ||| || || | Sbjct 167704 TACACTTCGAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCCT 167763 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTAT 364926 || || || || ||| |||| || |||||| |||| |||||||||| Sbjct 167764 TGGTTGCT--TC-GCGACCTTGTTGACCTTGGTCTGTGGTCGGACAACATGAAGAACCGC 167820 Query 364927 ATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCT 364986 ||||| | | || |||||| | ||||||||||| | |||| | || | ||| || Sbjct 167821 ATCATTTCGGACAACGGTTCTATCCAGAACATTCCCAGTATTCCGGCGGACATCAAGTCT 167880 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 | ||||| || || ||||| ||||| ||| ||| | || | ||||| || || || Sbjct 167881 CTGTACAAGACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCTGACCGT 167940 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCC 365106 ||||| ||||| |||| |||||||| ||| | ||||| | ||||| | | Sbjct 167941 GGTGCCTTTATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACTATGGGC 168000 Query 365107 AAGCTTACATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTAAGACAGGT 365157 ||| |||| |||||| || | |||| ||||| ||||| ||||| ||| Sbjct 168001 AAGATTACCAGCATGCACTT-TGCGGGTTGGAAGCTTGGTCTCAAGACGGGT 168051 >seq185 Length=20677 Score = 91.5 bits (100), Expect = 4e-13 Identities = 284/437 (65%), Gaps = 11/437 (3%) Strand=Plus/Minus Query 22214 TTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTG 22273 |||| || ||||| || || | |||||||| ||| ||||| | || ||| Sbjct 17427 TTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGTCGAGCGTTTCT 17368 Query 22274 CATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAA 22333 | |||| |||| ||| || ||| | || ||||| ||| | || || ||||| || | Sbjct 17367 CTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATGGAGA 17308 Query 22334 ATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGAC-GAA 22392 | ||||| |||| || || ||| || || | | || | || | | || | | Sbjct 17307 ACATTCACTCGGAGACGTACTCTTTGCTGAT----TGACACCTACATTAAGGAGCCTGCT 17252 Query 22393 CAACGAA---ACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGAT 22449 || || | || | ||| ||| ||| ||| |||| | ||| ||||| || Sbjct 17251 CAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGAC 17192 Query 22450 TGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTT 22506 ||||| ||||| ||||| | |||| || | || || | |||||| |||| || Sbjct 17191 TGGGCCCTGAAGTGGATTACTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTTGCCTTC 17132 Query 22507 GCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaa 22566 || | ||||| || || ||||| ||||| || ||| | ||||| ||||| || Sbjct 17131 GCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAAG 17072 Query 22567 CGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTT 22626 |||| | ||||| ||| | || || || || ||| | || || |||||||||||| Sbjct 17071 CGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTT 17012 Query 22627 CATACCGATTTTGCGTG 22643 || || |||||||| || Sbjct 17011 CACACGGATTTTGCCTG 16995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347571582302