Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq26 170 2e-37 seq44 132 5e-26 seq68 102 8e-17 seq33 95.1 1e-14 >seq26 Length=269500 Score = 170 bits (188), Expect = 2e-37 Identities = 801/1258 (64%), Gaps = 37/1258 (3%) Strand=Plus/Minus Query 144914 ATTTCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGA 144973 || |||||| | |||||||||| | || |||| ||||||| | | ||| ||| Sbjct 167903 ATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCCGGAATACTGGGAATGTTCTGG 167844 Query 144974 ATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTG 145033 || || || |||| || || ||| |||| ||| | | || |||| || | Sbjct 167843 ATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACC-AAGGTC 167785 Query 145034 ATCAAG-TCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACG 145092 | |||| ||| || || | | ||||| ||||| ||||| || ||||||||||| || Sbjct 167784 AACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 167725 Query 145093 CAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGT 145152 | || | ||| || ||| | || || || ||||||| || ||||| || || | || Sbjct 167724 CTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGT 167665 Query 145153 CGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTC 145212 | || ||||||||| ||||| | | || ||||| | |||| || ||| || | Sbjct 167664 TGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTG 167605 Query 145213 TTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 ||||| || | ||||||||| || | | ||| | || |||||||||||| |||| Sbjct 167604 CTCCTTCAGAGAGTTCCAATCCCACAGGTCACTGGGCGTGACATCCCACATGTCGAACTG 167545 Query 145273 CAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGC 145332 | || |||| | | || ||| | | | |||| | || | || Sbjct 167544 AAGGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGC 167485 Query 145333 GAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG 145392 || ||||| ||||||||||| || ||||| |||||| || ||| ||||||| Sbjct 167484 GATATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG 167425 Query 145393 CAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCC 145452 | | || || | ||| | |||||||| || | || |||||||| || || Sbjct 167424 CTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACC 167365 Query 145453 CTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGG 145512 ||| | || || || ||||| || || ||||||||| ||| ||| | | ||| Sbjct 167364 CTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGG 167305 Query 145513 ATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCG 145572 || | || || || || |||||||| || || || ||||| || | | | Sbjct 167304 GTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTG 167245 Query 145573 CAACTTTTCAAAGTC-AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCG 145631 || ||| | ||||| | | | | || | | | ||| || | || || | || Sbjct 167244 CAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTA-GTCAACAAAGGCAGGGAGAGCAAGCG 167186 Query 145632 ACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACA 145691 ||||||| || || || ||| ||| || | ||| ||| | | ||||| | ||| | Sbjct 167185 ACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAA 167126 Query 145692 AATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCT 145751 ||| || || |||||||| || | ||| ||||| || | |||||| |||| Sbjct 167125 GGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCT 167066 Query 145752 TGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGT 145811 |||| | |||| | || ||||||||| ||| | |||| ||| | || | Sbjct 167065 TGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCT 167006 Query 145812 CCTGCGCACGCACCTGCTGCTGGTA--GCGGCC---CTCTTC---TTCGTATTTCCTGTA 145863 ||| | ||| || ||||| ||||| |||| ||||| || ||| Sbjct 167005 TCTGAG------CCT--TGATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGACGTA 166954 Query 145864 GAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACAT 145923 || ||||||| | |||||| ||||| | || ||| || |||| |||||| ||||| Sbjct 166953 AAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACAT 166894 Query 145924 CAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 || | |||| ||||||| | || |||| ||| |||||||| || | |||||| || Sbjct 166893 GAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGC 166834 Query 145984 GTACATCAAGTCGCGCGCTTTGCAA---TCCTCAGCACCCATGTTTCGCTTC---AAATT 146037 | ||| ||||| || || | ||||| ||| ||| |||| | | Sbjct 166833 AAGGAACAAATCGCGAGC---GCGAATCTCCTCCTTACCGTGGTT---CTTCCGGAGGTC 166780 Query 146038 AAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096 ||| | ||| | | | || ||||||||||| || | || | ||| | || || | Sbjct 166779 AAGGA-ACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGAC 166721 Query 146097 GTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 | ||| |||||||| || |||| ||| | |||| || ||||| |||| ||| || Sbjct 166720 GCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGG 166663 >seq44 Length=213652 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||||| || |||||||| || Sbjct 151999 GCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 152058 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 152059 CAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGG 152118 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | ||||||| ||||||| Sbjct 152119 GATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 152178 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| ||||| || ||||| |||||||| Sbjct 152179 CTCGAGAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||| |||||||||||||||||||| || Sbjct 152228 CCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAG 152287 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || | |||||||||||||| || Sbjct 152288 AGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 152347 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||||| | || | ||||| | ||||||| Sbjct 152348 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGACC 152407 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || ||||| || || || |||||||||||||| Sbjct 152408 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| ||| | |||||| || || ||||||||||| Sbjct 152486 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 152545 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | ||||||||||||||| || || || || ||||| ||| || |||| Sbjct 152546 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTG 152605 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||| || | |||||| | |||| || | ||| || || || ||||| Sbjct 152606 ACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTC 152665 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 152666 TTGACGAAAATCTGCAT 152682 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| ||||||||||| ||| | |||||| ||||| ||||||||||| Sbjct 152714 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 152773 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||||| ||||| || || ||||| ||| || |||| Sbjct 152774 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 152833 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | ||||||| |||||| | |||| ||| | ||| || ||||| Sbjct 152834 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 152886 >seq68 Length=156602 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| || | Sbjct 123676 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 123735 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 123736 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 123795 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 123796 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 123855 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||| | ||| ||||| || || || || |||||| Sbjct 123856 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 123894 >seq33 Length=249776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | |||||| ||||| ||||||||||| ||| | | Sbjct 209244 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 209185 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 209184 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 209125 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | ||||||| || | ||| | || ||||| || || || || |||| Sbjct 209124 CGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 209065 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 209064 AAATCTGCAT 209055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010670042240