Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq44 102 7e-17 >seq44 Length=213652 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||| | || ||| | ||||| Sbjct 152015 AGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCC 152074 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 |||| || || || ||| | ||||| ||||| |||||| || | ||||| |||| | Sbjct 152075 TCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 152134 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| ||| || | | | | || ||| | ||| || | |||||||| Sbjct 152135 TGGATCTTGCT-CTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGT 152193 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| || || || || |||||||| Sbjct 152194 CTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || ||||||||||||| | ||| | | || || | || Sbjct 152480 TGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGC 152539 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | ||||| ||||| |||||| || | ||||| ||||| || ||| Sbjct 152540 TTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTT 152599 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 | ||| || | | | | |||||| || ||| || | |||||||| || || | Sbjct 152600 G--ACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAG 152657 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| ||||||||||| Sbjct 152658 TCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| ||||||||||| | | || | | ||||| | || Sbjct 152252 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCCTCAAGCTGC 152311 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || |||| || ||||| |||||| || | ||||| ||||| ||| | | Sbjct 152312 TTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTC 152371 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | || || | ||| || | ||| ||||| || |||||| Sbjct 152372 GACTTGACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGCCGGTC 152431 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| ||||||||||| Sbjct 152432 AGGGTCTTGACGAAAATCTGCAT 152454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086217739390