Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq44 131 1e-25 seq33 107 2e-18 seq68 98.7 8e-16 >seq44 Length=213652 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || ||||||| || || || || | Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||| || || ||||||||||||||||| || || || Sbjct 152622 GACACTATCGACAACGTCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 152563 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | || ||| ||||||| ||||||| |||||| Sbjct 152562 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 152503 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 152502 ATTCAGAAGGAGTCTAC 152486 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || | || ||||| || || | | Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| ||||||||||||||||| || || || Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| ||| || |||| || |||||| Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAAC 152275 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || |||||| | || | ||| | || |||| || ||| Sbjct 152274 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGT 152227 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || ||||||| || || || | || Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || |||||||||||||| || || || || Sbjct 152166 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 152107 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| ||| ||| | || || |||||| Sbjct 152106 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 152047 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 152046 ATCCAGAAGGAGTCCAC 152030 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||||||| | ||| || |||| Sbjct 152886 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGTCC 152827 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || || || || || || ||||| Sbjct 152826 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAG 152767 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| ||||||| ||||||||||| || || || || Sbjct 152766 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGAGTCTAC 152714 >seq33 Length=249776 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| ||||| || | || ||||| ||| |||| ||||| || || Sbjct 209049 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAG 209108 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | | || || | ||| | |||| || || || ||||||||||| ||||| || Sbjct 209109 TCTTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 209168 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | |||||| ||||||| | || || Sbjct 209169 GACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 209228 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 209229 TACAACATCCAGAA 209242 >seq68 Length=156602 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || |||| || || || || | | || ||| | Sbjct 123894 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCAT 123835 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||||||||| || || ||||| || || Sbjct 123834 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 123775 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| | || || |||||||| || || Sbjct 123774 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 123715 Query 22407 AGAATCCAC 22415 || ||||| Sbjct 123714 GGAGTCCAC 123706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726153327965