Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq26 159 7e-34 seq11 147 4e-30 seq185 123 5e-23 seq15 109 1e-18 >seq26 Length=269500 Score = 159 bits (176), Expect = 7e-34 Identities = 456/695 (66%), Gaps = 7/695 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||||||| |||||||| | | || || || | ||| Sbjct 167964 CTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTACGCTGAGA 167905 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| | ||||| || | |||| | || ||||| Sbjct 167904 AATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCCGGAATACTGGGAATGTTCTG 167845 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 |||||| || || | ||| || |||||||||| | || ||||| ||| | | Sbjct 167844 GATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCAAGGTC 167785 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 || || ||||| | | ||| ||||||||| ||||||||||||| | || || Sbjct 167784 AACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 167725 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414 |||||||||||||||| || ||| ||| || |||||| | ||| Sbjct 167724 CTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGT 167665 Query 293415 AGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACCCTTCT---TGACAC 293470 || || || ||||| | || || | ||| ||||| | ||||| |||| | | Sbjct 167664 TGACGCAGTGGGCATGGGCGCCAGGAG-CAGCGAGTTGCGAACACCGTTCTGCTTAATCT 167606 Query 293471 GCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529 || | ||| ||| ||| | || ||| || || ||| |||| | | || Sbjct 167605 GCTCCTTCAGAGAGTTCCAATCCCACAGGTCACTG-GGCGTGACATCCCACATGTCGAAC 167547 Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589 || | |||||||| | ||||||| ||||| | || | | | || | || || Sbjct 167546 TGAAGGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCA 167487 Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649 | || ||||| || ||||| | |||||| ||||||| ||||||||||| |||| Sbjct 167486 GCGATATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 167427 Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709 |||| ||||||| |||| ||||| ||||| || | ||| |||| |||| Sbjct 167426 AGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGA 167367 Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACC 293769 ||||| ||||| ||||||| ||| || ||||| ||||||| || |||||| ||| Sbjct 167366 CCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACA 167307 Query 293770 GCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || ||||||||||| | | || || ||| Sbjct 167306 GGGTAGTGGTTCACATCAATGATACGGTTCAAGTT 167272 >seq11 Length=386517 Score = 147 bits (162), Expect = 4e-30 Identities = 441/673 (66%), Gaps = 11/673 (2%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || ||||| ||||| |||||||||||||||||||| || || |||||||||| | Sbjct 21030 GCCTGTTGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGTT 20971 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | | ||||||||||| |||| || || || || |||||| |||| ||||||| Sbjct 20970 GCAGAAGGCCGATGTCCTGTTGCTGGACGAACCTACTAACCACTTGGATGTTGCCAACGT 20911 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | |||||| | || | | | || | || |||||||| ||||| Sbjct 20910 CAAGTGGCTTGAGAACTACCTCAAGAGCCACACCGAAATTACCTCGCTCATTGTTTCTCA 20851 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||| ||||| || | || | ||| || |||||| ||| || ||| Sbjct 20850 CGACTCTGGTTTCCTTGACGAAGTCACCACTGATATTTATCACTACGAGGCCAACAAGAA 20791 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGC 279991 ||| || | || ||| |||||| | |||||||| | |||||||||||| | Sbjct 20790 GCTGGCCCTGTACCACGGTAACCTGGCCGCTTTCGTCCAGATGCGCCCTGAGGCCAAGTC 20731 Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 ||||| |||| || | | | ||| | ||||| || || | || Sbjct 20730 TTACTACACCCTGTCGGCTTCGCTGGTCCAGTTCAAGTTCCCCCCTCCTGGTATCCTCAC 20671 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || ||| || || ||| || ||||| | | ||| || ||| || Sbjct 20670 TGGTGTCAAGTCCAACACTCGTGCCATCATCCGCATGACCGATGC--TACCTACCAGTAC 20613 Query 280110 CCCAATGGCCCCAA--CATCT-TCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 ||||| | ||||| | ||| | |||| || | ||| | || | || || Sbjct 20612 CCCAAGGCGCCCAAGCCCTCTCTGAGCAACGTTTCTTGCCAGCTGACTCTTTCTTCGCGT 20553 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| | || || ||||||||||| |||||||| || || ||||| | ||||||| Sbjct 20552 GTTGCGATTATCGGCCCCAATGGTGCTGGTAAGTCAACTCTCATCAAGATGTTGACTGGT 20493 Query 280227 GAGACCCAGGCCACT-GAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACG 280284 ||| | || || | ||||| |||| |||||| |||||| |||| || | |||| Sbjct 20492 GAG--GTTGTCCCCTCGCAGGGTCGCGTTGAGAAGCACCCCAACCTGCGTATTGGTTACA 20435 Query 280285 TCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACA 280344 || ||||||||| | | ||| | || | ||| |||| | |||||| ||||| ||| Sbjct 20434 TCAAGCAGCACGCTCTTGAGCACGTTGAAATGCACTTGGAGAAGACTCCCAACCAGTACC 20375 Query 280345 TTCAGTGGCGCTA 280357 | |||||||| || Sbjct 20374 TCCAGTGGCGTTA 20362 >seq185 Length=20677 Score = 123 bits (136), Expect = 5e-23 Identities = 404/616 (66%), Gaps = 19/616 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | || ||||| ||||||||||||||||||||| | | Sbjct 16728 TCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAG 16787 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTAC--GAAGATGCGGTCTGCCACAAACTCCA 251680 || ||||| |||| | || || || || ||||| ||||| || || ||||| | Sbjct 16788 GCCTTGTATACCTTGTCGTTACCGAGAGCGACCAGAAGA--CGGTCGGCGACGAACTCGA 16845 Query 251681 GATACTGTCC-CATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAG 251739 ||| ||| ||| || |||| |||||| || | | | || |||| ||||| Sbjct 16846 TATAG-GTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTA 16904 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAG 251795 | ||| ||||| || || | || || || | || ||| ||| ||| | | | Sbjct 16905 AGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTTGCTG 16964 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 | | | |||||| || | ||| | || || | |||| | ||| |||||||| Sbjct 16965 GGGCGG-TTGTTC---AGGTGAGAGAAAAGAAGGCAGGCAAAATCCGTGTGAAGACCCTC 17020 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||| | ||||||||| | | || || ||||||| ||||| || | || Sbjct 17021 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCAAACCACGCTTGCGCAG 17080 Query 251916 CCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 ||||||||| | ||||||| | |||||||| | | |||||| ||| | | |||| Sbjct 17081 CCAGAAGATGGAGGCAAAAGCA-CCAGAGAAGAAGATACCCTCAACAGCGGCGAAGGCAA 17139 Query 251975 CAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 |||| |||| |||||| ||||| | | | | ||||| | ||||| | |||| Sbjct 17140 CAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCCCAGTCGGCCT 17199 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 | | || ||| || || || || || | ||||| | | |||| ||| | Sbjct 17200 TGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCGCTGAGCAGGCT 17259 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| ||| | |||| ||| | ||||||| ||||||| || ||| || | | | Sbjct 17260 CCTTAATGTAGGTGTCAATCAGCAAAGAGTACGTCTCCGAGTGAATGTTCTCCATCATGA 17319 Query 252152 TCTGGTAAGCATAGAA 252167 ||||| || | ||||| Sbjct 17320 TCTGGAAACCGTAGAA 17335 >seq15 Length=363638 Score = 109 bits (120), Expect = 1e-18 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 279320 CGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGC 279379 ||| || ||| |||| |||| |||||||||||||| |||| |||||||||||| Sbjct 115836 CGACGCTGAGGAGGACGATGAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCGCTCGC 115777 Query 279380 ATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTA 279439 || |||| |||||||| || ||| || | ||| | |||||||| | || || Sbjct 115776 CTACGGTGCTAAGATTCTTCTCAACCAGACTCACCTTCGTCTTAAGCGTGGTCAGCGTTA 115717 Query 279440 TGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 ||||| ||||||||| || | || ||| ||| || ||||| ||||| |||| Sbjct 115716 CGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGA 115657 Query 279500 TCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACA 279558 ||| | | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| Sbjct 115656 GCAGGTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACTGTCTTCGTCGAGCACGACC 115598 Query 279559 TCGACTC 279565 | ||||| Sbjct 115597 TGGACTC 115591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832045933601