Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq68 163 5e-35 seq44 158 2e-33 seq11 149 1e-30 seq185 123 5e-23 seq15 102 2e-16 >seq68 Length=156602 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 123676 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 123735 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || ||| Sbjct 123736 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 123795 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 123796 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 123855 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||||||||| || ||||| |||||||||||||| Sbjct 123856 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 123893 >seq44 Length=213652 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || || ||||| || |||||| Sbjct 152456 CCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAG 152515 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || | || ||||| || ||| Sbjct 152516 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGA 152575 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||||| ||||||| ||||| ||||| | || || || Sbjct 152576 ATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCAACC 152635 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || ||||||||||| |||||||| Sbjct 152636 TCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| ||||| ||||| || || ||| Sbjct 152228 CCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAG 152287 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || ||| Sbjct 152288 AGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 152347 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | |||||| || ||||| || | || || || Sbjct 152348 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGACC 152407 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || |||||||||||||| |||||||| Sbjct 152408 TCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 >seq11 Length=386517 Score = 149 bits (164), Expect = 1e-30 Identities = 438/669 (65%), Gaps = 17/669 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| |||||||||||| ||| | |||| ||| | |||| || | | | Sbjct 20362 TAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCCAAGTGCATTTCAACGTGCTCAAGA 20421 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| | | Sbjct 20422 GCGTGCTGCTTGATGTAACCAATACGCAGGTTGGGGTGCTTCTCAACGCGACCCTGCGAG 20481 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||| || || | | ||||||||| || | ||| || |||||||||||||| Sbjct 20482 GGGACAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCATTGGGGCCG 20541 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 || | ||| || || || | | | ||| | |||||||| | || || Sbjct 20542 ATAATCGCAACACGCGAAGAAAGAGTCAGCTGGCAAGAAACGTTGCTCAGAGAGGGCTTG 20601 Query 225215 GG-GCCA----GTT-TGGTAAGCAAAGGCCACGC-CACGCAGCTTCATGATGGCACGGTC 225267 || ||| || ||||| | | || || || || | ||||||||||| Sbjct 20602 GGCGCCTTGGGGTACTGGTAGGTA---GCATCGGTCATGCGG----ATGATGGCACGAGT 20654 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | ||| |||| || || |||||||| ||| | || || | Sbjct 20655 GTTGGACTTGACACCAGTGAGGATACCAGGAGGGGGGAACTTGAACTGGACCAGCGAAGC 20714 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 | |||| ||||||||| ||||| || ||| | |||||||| | |||||| || Sbjct 20715 CGACAGGGTGTAGTAAGACTTGGCCTCAGGGCGCATCTGGACGAAAGCGGCCAGGTTACC 20774 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTC 225447 | ||| | | ||||| ||| |||||| ||| ||| | | | ||| |||| Sbjct 20775 GTGGTACAGGGCCAGCTTCTTGTTGGCCTCGTAGTGATAAATATCAGTGGTGACTTCGTC 20834 Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| ||||||||||| || ||||||| || | | | || ||| |||||||| Sbjct 20835 AAGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATTTCGGTGTGGCTCTTGAGGTA 20894 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | ||||| |||||| || |||| |||||| |||||||||||||| | ||| Sbjct 20895 GTTCTCAAGCCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAACAG 20954 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || || || | | |||||||| | |||| |||||||| ||||| || ||||| Sbjct 20955 GACATCGGCCTTCTGCAACATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGA 21014 Query 225628 CAGGGAGCC 225636 ||| || || Sbjct 21015 CAGCGAACC 21023 >seq185 Length=20677 Score = 123 bits (136), Expect = 5e-23 Identities = 292/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||||||||| || || || |||||||||||||| ||| || | Sbjct 16691 CAGGACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACC 16750 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||||||||| |||||||| ||| | |||| || ||| Sbjct 16751 AAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGGCCTTGTATACCTTGTCGTTACC 16810 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | || ||||| || ||||||||||| || |||| ||||| | ||| Sbjct 16811 GAGAGCGACCAGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTT 16870 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| || | | |||||| | || ||| || ||| ||||| || || |||| || Sbjct 16871 CATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGC 16930 Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | || | | ||| | | |||||| || | || Sbjct 16931 ATCAGTGATGATGTCCTGGATCAACTGCTTGCTGGGGC-GGTTGTTC---AGGTGAGAGA 16986 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || |||| | | ||| || ||||| || || ||| | ||||||||| | Sbjct 16987 AAAGAAGGCAGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGA 17046 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 || || ||||||||| | || || |||||||||||||| |||| | || | || | Sbjct 17047 AAGTCAAACCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAG 17106 Query 10351 AGAACAGAAGACCCTCCAC 10369 |||| | | |||||| || Sbjct 17107 AGAAGAAGATACCCTCAAC 17125 >seq15 Length=363638 Score = 102 bits (112), Expect = 2e-16 Identities = 433/666 (65%), Gaps = 31/666 (5%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| |||||| |||||| ||||| || |||||| Sbjct 114802 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 114861 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 114862 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 114921 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| ||||| ||||| || || | ||| || ||||| ||||| ||||| Sbjct 114922 ATGAG-CTCACCGGTAAGGACGTTGATCAGAGTCGACTTACCAGCACCGTTGGGACCAAT 114980 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCC 225219 ||| |||| ||||| || | ||| | | || | ||| |||| ||| | Sbjct 114981 GACGGCAATACGGGAACCCAGGGAGCACTGGAAAGAAATGT--CCGAA-ATCT--GGGGC 115035 Query 225220 AGTTTGGTAAGCAAAGGCCACGCCACG-CAGCTT-----CATG----ATGGCACGGTCCT 225269 |||| | || | ||| || ||| || | ||||| | ||| Sbjct 115036 TTCGAGGTA--CCGGGGTACTGGAACGACATCTTGGTAGCACGGAGAATGGCCTTGGCCT 115093 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | |||||| ||||| |||||||||||||| ||| | || | | | | Sbjct 115094 TGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCGGAGGCGC 115153 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || ||||||||||| || ||| | ||| ||||| | | |||||| || Sbjct 115154 CGAGCTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCGGCCAGGTTACCAC 115213 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | |||||| || | ||| ||| | ||| || |||| Sbjct 115214 GGTAACGCTTAAGCTTGAAG---CGCTCGTAGTGGATAATGTGCTG-GCAGACATTGTCA 115269 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTG 225507 ||||||||||||||||| || |||||||| || | || | | || | ||||| Sbjct 115270 AGGAAGCCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGTTGC-AGAGGT- 115324 Query 225508 CGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCA 225566 || | ||||| ||||| | || |||| ||||| ||||| ||||| ||||||| Sbjct 115325 AGTCCTCAAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCA 115384 Query 225567 GGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGG 225626 | || || | | | || || ||| || |||| ||||||||| ||||| || || | Sbjct 115385 GAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAG 115444 Query 225627 ACAGGG 225632 | |||| Sbjct 115445 AAAGGG 115450 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGA 225810 |||||| || | | ||| | ||| | |||||| || ||| | || ||| || || || Sbjct 115572 GGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACAGTCTTGACCTCGGA 115631 Query 225811 AGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCC 225870 | |||||| ||||| | ||| | || || ||||| | ||||| |||||| Sbjct 115632 CTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTGCC 115691 Query 225871 CGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGA 225930 | |||||||||||| || |||||| | | || ||||| | ||| | || Sbjct 115692 GGAACCGTTGGGACCGCAAAGACCGTAACGCTGACCACGCTTAAGACGAAGGTGAGTCTG 115751 Query 225931 GTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACC 225990 ||| || || ||||| |||| ||||| || ||||| ||| | |||||| |||||||| Sbjct 115752 GTTGAGAAGAATCTTAGCACCGTAGGCGAGCGAGAAAGTGCAGTTGCACAGATCCTCACC 115811 Query 225991 CTCCTC 225996 |||||| Sbjct 115812 CTCCTC 115817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618241178920