Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq44 118 9e-22 seq68 86.0 5e-12 >seq44 Length=213652 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | || || || |||||||||||||| || Sbjct 152225 ATACCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCC 152284 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| ||||| || ||||||||| | || || ||||| |||||||| Sbjct 152285 GAGAGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGG 152344 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | |||| ||| || | || ||| Sbjct 152345 GGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCG 152404 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||||||||| || || || ||||||||||| Sbjct 152405 ACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || ||||||||||| ||| Sbjct 152453 ATACCACCACGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 152512 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||| || || ||||| |||| |||||||| |||||||| Sbjct 152513 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGG 152572 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | || | ||||| | ||| || Sbjct 152573 GGAATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCA 152632 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||||||| || || ||||||||||| Sbjct 152633 ACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || ||||| || || || || |||||| Sbjct 152030 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 152089 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| |||||||| || || || || ||||| ||||| || Sbjct 152090 GCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 152149 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| || ||||| || | || | || || ||||||||||| Sbjct 152150 ACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGAGTC 152209 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 152210 TTCACGAAGATCTGCAT 152226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || ||||||||||| ||| Sbjct 152681 ATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 152740 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||| ||||| || || |||||| | || || ||||| |||||||| Sbjct 152741 GAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGG 152800 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| ||| || Sbjct 152801 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCA 152860 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358 || || | ||| | || |||||||| Sbjct 152861 ACCTCGAGGGTGATGGTCTTGCCGGT 152886 >seq68 Length=156602 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 123673 ATACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 123732 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || |||||| |||| || |||||||||||||| Sbjct 123733 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGG 123792 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||| | || ||| Sbjct 123793 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 123852 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 || |||| ||| | || || || ||||| || || || ||| Sbjct 123853 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 123894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132551539932