Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq185 336 4e-87 seq26 197 3e-45 >seq185 Length=20677 Score = 336 bits (372), Expect = 4e-87 Identities = 603/871 (69%), Gaps = 20/871 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| |||||||| ||||| || ||| |||||||||| Sbjct 17566 ATCAAGTACCACGAGATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGGACCGCC 17507 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC---TGTCTGAGAACGAA 42401 |||||||||||||| ||||||| || |||| | | || || || | ||| Sbjct 17506 GAGGAGATTGACCTTTCCAAGGATCTTCACGACTGGAACAACCGCATGACTAAGGATGAA 17447 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 |||| ||| || || | || ||||||||||||||||||||||| || || || ||| Sbjct 17446 CAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTTAACGAG 17387 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||| ||| | | ||| ||||| ||| | ||| || || ||||||||||| Sbjct 17386 AACTTGGTCGAGCGTTTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGT 17327 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| || |||||| | ||||| ||| |||| | ||| | |||| ||| Sbjct 17326 TTCCAGATCATGATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTAC 17267 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || ||| || | |||| | || ||||| ||||| || || || |||||||| Sbjct 17266 ATTAAGGAGCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATT 17207 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGA 42700 ||||| |||||||| || || ||||| | | | | | | || || | | Sbjct 17206 CGCCGCAAGGCCGACTGGGCCCTGAAGTGGATT-ACTGACAAGGAGTCGACTTTTGCTCA 17148 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | || || ||||| |||| || ||||| ||||||||||| || || || |||||||| Sbjct 17147 GCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCAT 17088 Query 42761 CTTCTGGCTCAAGCAGAAG-GTG--TCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||| || ||| ||| | ||||||||| | || ||||| ||||| || || Sbjct 17087 CTTCTGGCT---GCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTAT 17031 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | | || ||||| || || | ||| ||||||||||| || ||||| ||||| | Sbjct 17030 CTCTCGTGATGAGGGTCTTCACACGGATTTTGCCTGCCTTCTTTTCTCT---CACCTGA- 16975 Query 42878 GCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 |||| |||| | ||| || | ||| || ||||||||| || ||||| | || || Sbjct 16974 --ACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGA 16917 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 |||||||||||| || || | || ||| | || |||| |||||| |||||||| Sbjct 16916 GAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTCAT 16857 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054 | | || ||| ||| ||||||||||| ||| ||| | | ||| | | | Sbjct 16856 GAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGGT 16797 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 ||||| | | |||||||||||| |||||||||||||| | | || |||||||| Sbjct 16796 ATACAAGGCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGAAAGACCAA 16737 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||||||||| || | || |||||| Sbjct 16736 CTTCTTCGAGAAGCGTGTTGGTGATTACCAG 16706 >seq26 Length=269500 Score = 197 bits (218), Expect = 3e-45 Identities = 878/1375 (64%), Gaps = 53/1375 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || ||| ||||||||||| | ||| || || Sbjct 167760 GTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGG 167701 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||| ||||| ||||| | || |||||| |||||||||| || Sbjct 167700 CTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAG 167641 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 ||||| ||| | || |||| | || || || || ||| |||||| ||| Sbjct 167640 GAGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGA--GTTCCAATCC 167583 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 |||| | | | || |||| || |||||||||| ||||| || | |||| Sbjct 167582 CACAGGTC--ACTGG-----GCGT--GACATCCCACATGTCGAACTGAAGGATACCCTGA 167532 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGC--GCTGGGCCA--GCTTACA 244383 ||| || ||||||||| |||| ||| | ||| || || | | | || | | Sbjct 167531 GAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAA 167472 Query 244384 GCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 || || || || |||| ||| ||||||||||||||| |||||| | | || || Sbjct 167471 GCC----TCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGAGC 167416 Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 || | | | || || |||| | || |||| | |||||||| ||||| || || Sbjct 167415 CTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACC 167356 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||| | ||| ||| ||||| | | ||| ||| || ||||| ||| Sbjct 167355 AACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTT 167296 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | || || | ||| | ||||||| | | | ||| ||| |||| ||| Sbjct 167295 CACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTG 167236 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| || | | || | | || | ||||| | ||| || | Sbjct 167235 GAAGTCGTAGCAGTTG------TTGGTG-TAGTCA-----ACAAAGGCAGGGAGAGCAAG 167188 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 |||| |||||| || |||||||| || | | ||||| || |||||| ||||| Sbjct 167187 CGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCA 167128 Query 244744 GAGGTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 ||||| ||||| || || ||||||| || || || |||| ||||||| Sbjct 167127 AAGGTTGGAACTGCGA---ATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTG 167071 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||| | |||||| || || ||||| ||| || | || | | ||| Sbjct 167070 ATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCA 167011 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACA 244919 || | | |||||||| || || ||| | ||| | |||||| | ||| | Sbjct 167010 CAGCTTCTGAGCCTTGATGGTAAGACG-GCCACGTCCTTCCCGCTCGTACTTGACGTAAA 166952 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | ||||| || || || | || | | ||| |||||| |||||||||| Sbjct 166951 GAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGA 166892 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||| |||||| | || || | || |||||| | ||||||||||| ||||| Sbjct 166891 GGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAA 166832 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 |||| | || | | | ||| ||| || |||||||| || || | || | Sbjct 166831 GGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACT 166772 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 |||| || || ||||||| ||||||| ||| | || | || || || |||||||| | Sbjct 166771 CAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTAC 166712 Query 245160 CTCCCTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATG 245215 | ||||| || | | | ||||| | | ||||||| ||||| |||| || || Sbjct 166711 CACCCTGATCGA----CGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATA 166656 Query 245216 CCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGA 245273 ||||| ||| ||||||||||| || |||| || | | | | | | || Sbjct 166655 CCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAGCG 166596 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || | || | || || || ||||||||| | || ||| |||||| ||| || Sbjct 166595 TTGAGA--CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 166538 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393 || || || || |||||| |||||||| | || |||||||| || ||||| |||| Sbjct 166537 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 166478 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| | | | |||||| || || || |||||| || ||| | |||||| Sbjct 166477 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 166423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334938669360