Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq44 116 9e-21 seq185 98.7 2e-15 seq68 98.7 2e-15 seq33 89.7 1e-12 >seq44 Length=213652 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | || || || || | ||| || || ||||| || ||||| Sbjct 151997 TGGCCACCACGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 152056 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || ||||| || | || || || || ||||| |||||||| || Sbjct 152057 GACAGGGTACGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGG 152116 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || || |||||||| || ||| || ||||| || || | |||| || || Sbjct 152117 GGGATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATGGTATCGGAAGACTC 152175 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 152176 GACCTCGAGAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| ||| ||||| || ||||| | || || || || ||| Sbjct 152492 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 152551 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || || ||| || || || || |||||||| || | || ||| Sbjct 152552 ATAAGACGCTGCTGG---TCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACG 152608 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || || || || ||||| ||||| ||||| || |||||||||||| Sbjct 152609 TTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTG 152668 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 152669 ACGAAAATCTGCAT 152682 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || |||| ||| || ||||| || || ||||| | | Sbjct 152228 CCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAG 152287 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || || || | || || || ||||| ||||| ||||| || || ||| Sbjct 152288 AGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGG---TCCGGG 152344 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || |||| || || || || || | ||| ||| || Sbjct 152345 GGAATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCG 152404 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| |||||||| ||||||||||| |||||||| Sbjct 152405 ACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 >seq185 Length=20677 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 || || |||||| || || ||| | || || || | |||||||||| || || ||| Sbjct 16918 GAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTC 16859 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGA 269230 ||||| |||||||| ||||| || || ||| |||| | || |||||| | || | Sbjct 16858 ATGAAGACCTATATCGAGTTCGTCGCCGACCGT--CTTCTGGTCGCTCTCGGTAACGACA 16801 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | || ||||| | || ||||||| ||| ||||| || || || | ||||||| Sbjct 16800 AGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGAAAGA 16741 Query 269291 CGAACTTCTTCGAAAAGCGTGT 269312 | ||||||||||| |||||||| Sbjct 16740 CCAACTTCTTCGAGAAGCGTGT 16719 >seq68 Length=156602 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||| | Sbjct 123676 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 123735 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| |||||||| || ||| Sbjct 123736 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTG---GTCCGGG 123792 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | || || || Sbjct 123793 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 123852 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||||| ||||| || ||||| ||||||||||| Sbjct 123853 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 123893 >seq33 Length=249776 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| || || || | || || || ||||| ||| Sbjct 209242 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 209183 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || |||||||| || | || ||||| Sbjct 209182 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 209126 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||||||||| || || || ||||| ||| Sbjct 209125 TCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 209066 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 209065 AAAATCTGCAT 209055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179648943729758