Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq185 134 3e-26 seq15 93.3 9e-14 >seq185 Length=20677 Score = 134 bits (148), Expect = 3e-26 Identities = 305/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 |||||| ||||||| || |||| | ||||| ||||| | || || || ||| Sbjct 17155 TTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTT 17096 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 | ||||||| |||||||| || ||| ||||||| || | | | || |||||| Sbjct 17095 GCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAG 17036 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 | ||| ||| || ||||| |||||| | || | ||| | | || | || Sbjct 17035 CTTATCTCTCGTGATGAGGGTCTTCACACGGATTTTGCCTGCCTTCTTTTCTCTCACCT- 16977 Query 243469 CAGAACAAGCTACCATTCGAAACGGTCAAACAA----ATCATCACAGAAGCAGTTGAAAA 243524 |||||| | || | || | || | | | |||||||| || || || | | Sbjct 16976 --GAACAACCGCCCCAGC-AAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCAT 16920 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || ||||| ||| || ||| ||| |||| ||| ||| | || |||||| |||| || Sbjct 16919 TGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCT 16860 Query 243585 CATGG-GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 |||| ||| || ||||| ||||| |||||||| || | |||| || ||| | || | Sbjct 16859 CATGAAGACC-TATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACA 16801 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | || ||||| || |||||||| | ||| |||||| ||| || ||| || || | Sbjct 16800 AGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGAAAGA 16741 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| |||||||| ||||||| || Sbjct 16740 CCAACTTCTTCGAGAAGCGTGTTGGTGATTACCA 16707 >seq15 Length=363638 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/364 (67%), Gaps = 24/364 (7%) Strand=Plus/Plus Query 333637 TGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGG 333696 ||| |||||| ||||| |||||||||||||| || | ||| | || || Sbjct 115100 TGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCGGAGGCGCCGAGCT 115159 Query 333697 CGTAGTAACTC---GCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGT 333753 |||||||| | || || ||| | |||||| |||||||||| ||| || || || Sbjct 115160 CGTAGTAAGACTTGGCAGA---GGGGCACTTCTTGACGAACTCGGCCAGGTTACCACGGT 115216 Query 333754 ACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGG 333812 | ||| ||||| | | | ||||| |||||||| | | || || ||| ||| ||| Sbjct 115217 AACGCTTAAGCTTGAAGC---GCTCGTAGTGGATAAT-GTGCTGGCAGACATTGTCAAGG 115272 Query 333813 AACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTA 333868 || || |||||||| || ||||| | |||| || | |||| ||| ||||| Sbjct 115273 AAGCCAGAGTCGTGAGAGACAATGAT---CGAA--GTGC--AAGGAGAGTTGCAGAGGTA 115325 Query 333869 TTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAG 333928 || |||||| | ||||| |||| | ||||||||| |||||||||||||| || Sbjct 115326 GTCCTCAAGCCACTTGACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCAG 115385 Query 333929 TAGCTTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTG 333987 | | | | || | ||||| ||| ||||| || ||||| ||||| || || | Sbjct 115386 AATATCGGGAGCCTCGAAGACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAG 115444 Query 333988 AAAG 333991 |||| Sbjct 115445 AAAG 115448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874898835350