Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq26 149 7e-31 seq185 105 8e-18 >seq26 Length=269500 Score = 149 bits (164), Expect = 7e-31 Identities = 943/1500 (63%), Gaps = 35/1500 (2%) Strand=Plus/Minus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 |||||||| |||||||| || | || | | | || || || | ||||| ||| Sbjct 167759 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 167700 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||| |||||||||| || |||| || || || ||||||||||| |||| | Sbjct 167699 TCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGG 167640 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 114082 || || ||| || | ||| || | | |||| | ||||| || | || ||| || | Sbjct 167639 AGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCAC 167580 Query 114083 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGAT 114142 | | | | | | |||||| || ||||| |||||||| || ||| | || || Sbjct 167579 AGGTCACTGGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAG 167520 Query 114143 CCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 114202 ||||| | ||| ||| | || ||||| | || | ||| | ||||| || || Sbjct 167519 CCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCA 167460 Query 114203 GCGTGATACATTGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAA 114261 ||||| || || ||||| || || | || | || | |||||| | || ||||| Sbjct 167459 GCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGAC-GAGCCTCGGCAGACTCAAA 167401 Query 114262 CGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCG 114321 | | || | || |||| || ||||| |||||||| | ||||| || || Sbjct 167400 AGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACG 167341 Query 114322 ATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCT 114381 || | ||| || || || || | || || || ||| ||| || | | Sbjct 167340 GTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACG 167281 Query 114382 ATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC---T 114438 || | || | |||||||| |||| || || ||||| | | | || | | | Sbjct 167280 GTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTT 167221 Query 114439 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 114498 | || | ||| ||| | ||| || || | ||||||| || ||||||| Sbjct 167220 GTTGGTGTAGTCA---ACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCACACAGCCAC 167164 Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||| | | |||||| ||||| || || || | || ||||| ||| || || Sbjct 167163 CTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCC 167104 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 || |||||| || || ||| ||| || ||||||||| | |||| | || | || Sbjct 167103 CAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACC 167044 Query 114619 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGT--GGC 114675 |||||||| || | | |||||||| | ||| | | || | | || | | || | | Sbjct 167043 AGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTG-ATGGTAAGAC 166985 Query 114676 GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGC 114735 | | | || || ||| ||||||||| ||| || || ||||| || ||||| Sbjct 166984 G--GCCACGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCACCGTAACA 166927 Query 114736 CTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAAC 114795 || | | || || || | ||||| | ||| | ||||| || || |||||| Sbjct 166926 ATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAAC 166867 Query 114796 ACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTC 114855 |||||||||||| | || |||||||| || || ||| | ||| ||| |||| || Sbjct 166866 ACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTC 166807 Query 114856 TTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 114915 || | || || || || | || | || || | | ||| ||||||||||| || Sbjct 166806 CTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTC 166747 Query 114916 CAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGC 114969 |||||| | || | | || | |||| |||| |||| | || || | || Sbjct 166746 CAGGTAAATGGCAAAAGCACC---AGGACGCTTGTTACCACCCTGATCGACGTAACGAGC 166690 Query 114970 TGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCG 115029 ||| ||| || || || ||||| |||| ||||| | || || || || || Sbjct 166689 AGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCCGGC 166630 Query 115030 AATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTT 115089 |||| || | || | || | || || | ||| ||||| || ||| ||| Sbjct 166629 AATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCATCTT 166570 Query 115090 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATT 115149 ||||| || || | |||| | | ||||| || ||||| ||| |||| | Sbjct 166569 GGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCAT 166510 Query 115150 TGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGG 115209 | | | ||||||| || | || ||| || ||||| |||||||||||||| || Sbjct 166509 GTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGG 166450 Query 115210 TGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCC--AAGACG-GCG 115264 | ||||| ||| | | |||| ||||| || ||| || ||| || ||| | Sbjct 166449 AGAGGCGTGAGTGA--AGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACACGCTCA 166392 Query 115265 GGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 | | || ||| | ||||||| | || ||||||| ||||| || || || Sbjct 166391 ACATTATCACCCCAG---ATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCG 166335 Query 115325 ATCAGGATACCATCGAGCCTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | | ||||| ||| | | |||||| |||| |||| |||||||| ||||| || Sbjct 166334 ACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTT-TCCAGGGTCTTGAATCCAAAGTA 166276 >seq185 Length=20677 Score = 105 bits (116), Expect = 8e-18 Identities = 325/500 (65%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 16709 GTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCAT 16768 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | ||| | || |||| | ||| | | || Sbjct 16769 GAAGTCGAAGGGGTTGGAGGCCTTGTATACC---TTGTCGTTACCGAGAGCGACCAGA-- 16823 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 ||||| || | |||| |||| || || ||| |||| ||||||||||| || Sbjct 16824 AGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGA 16883 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 || || || || || | |||| |||||||||| | ||||| || | |||| Sbjct 16884 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 16943 Query 125993 GCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | || || | | | || | ||| || ||| || |||||| Sbjct 16944 TCCTGGATCAACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAA 17003 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 17004 TCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATC 17063 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 | ||| ||||| || |||||| || | ||| | ||| ||||||||||| ||||| Sbjct 17064 AAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCA 17123 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCAC 126229 ||| ||||| |||| ||||||| |||||| | ||||| |||| || |||| Sbjct 17124 ACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAG---TCGACTCCTTGTCAGTAATCCAC 17180 Query 126230 TTCATCGCCCACTGCGCCTT 126249 |||| ||||| | ||||| Sbjct 17181 TTCAGGGCCCAGTCGGCCTT 17200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350904441880