Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq26 188 7e-43 >seq26 Length=269500 Score = 188 bits (208), Expect = 7e-43 Identities = 603/923 (65%), Gaps = 32/923 (3%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||||| || ||||| | || ||||| |||||| | ||||||| | || | Sbjct 166276 TACTTTGGATTCAAGACCCTGGAAAGATCTTACCTTCTCAAGCTTGATGGCAAGATTGTC 166335 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||| || || || || | ||||| || || |||| || || | | | | Sbjct 166336 GAGCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAG 166395 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACC 93903 |||| || ||| || |||| | |||| | || ||| | || ||| Sbjct 166396 CGTGTTCTGGAAACTTACAATCTCATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACC 166455 Query 93904 CTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GACGAACAA 93962 || |||||||| || ||||| ||| ||| | ||||| || ||| || | ||| | || Sbjct 166456 CTCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGAC-ATGAA 166514 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||| ||| || || | || | ||||||| |||||| | ||||| || Sbjct 166515 GGAGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGAT 166574 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTACATCCGC 94080 ||||| || ||||| ||| | ||| |||| ||||| | |||||||| || | Sbjct 166575 GGCGGGTGGTATCGGTCTCAACGCTCAC--CGTATCCGTGCTACCGGTTCCTATATTGCC 166632 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || ||||| || ||||| ||||| | || |||||||| || |||||||| ||| | || Sbjct 166633 GGCACCAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCT 166692 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 || ||||| || ||||||||| | | | ||| |||| || | || || ||||| Sbjct 166693 CGTTACGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCG 166752 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| || ||| | ||| | ||||| || ||||||||||| || || |||| Sbjct 166753 TGGCACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGA---GGAG 166809 Query 94261 A---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | || | ||| || || ||| | || || | || ||||| || || Sbjct 166810 ATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTT 166869 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||||| ||| || |||| || | || ||||| || || || || || | || | Sbjct 166870 GAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGA---T 166926 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACG--AA--TCGCAGGGCAAGGCCAG 94433 ||| || ||| || || | |||| ||||| || || || |||| | Sbjct 166927 TGT--TACG----GTGAGGAATTTGAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGT 166980 Query 94434 GAAGGT-----TATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | || || | ||| |||||||||| || || |||| | ||| |||| Sbjct 166981 GGCCGTCTTACCATCAAGGCTCAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAG 167040 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || |||| || | ||| |||| |||||| | ||| |||| |||| |||||| || | Sbjct 167041 ACTGGTAACCCTTTCATGTTGTACAAGGATCACTG-CAACCGCAAGAGTAACCAGAAGAA 167099 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || || || || || || ||||| |||||| ||||||| |||| || Sbjct 167100 CCTGGGAACTATTCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGA 167159 Query 94608 CGAGATTGCTGTGTGTAACCTGG 94630 ||| | |||||||| ||| ||| Sbjct 167160 TGAGGTGGCTGTGTGCAACTTGG 167182 Score = 132 bits (146), Expect = 5e-26 Identities = 263/383 (69%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| || ||||||||||| | |||| ||| | |||| | |||| || ||| | Sbjct 167533 CAGGGTATCCTTCAGTTCGACATGTGGGATGTCACGCCCAGTGACCTGTGGGATTGGAAC 167592 Query 95053 GCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 |||| | | || ||| | | || | ||||||| ||| ||||||| |||| |||| Sbjct 167593 TCTCTGAAGGAGCAGAT-TAAGCAGA-ACGGTGTTCGCAACTCGCTGCTCCTGGCGCCCA 167650 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| || || || | ||||| || || |||||||||| ||||| || | ||| | Sbjct 167651 TGCCCACTGCGTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTACACTT 167710 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 | ||| | ||| | | || ||| | || || || |||| || ||||| | | Sbjct 167711 CGAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCCTTGGTTGC 167770 Query 95231 TACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 | || |||| || | | || ||| ||||| ||||| | ||||||| | | Sbjct 167771 TTCGCGACCTTGTTGAC-CTTGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTTCG 167829 Query 95290 GCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAG 95349 | |||||| || |||||||||| || || |||| |||||||||| | || |||||| Sbjct 167830 GACAACGGTTCTATCCAGAACATTCCCAGTATTCCGGCGGACATCAAGTCTCTGTACAAG 167889 Query 95350 ACCGTGTGGGAGATCCCGCAGCG 95372 || || |||||||| | ||||| Sbjct 167890 ACTGTTTGGGAGATTTCTCAGCG 167912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720967561560