Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq44 113 4e-20 seq33 105 6e-18 seq185 102 8e-17 seq68 102 8e-17 >seq44 Length=213652 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||| || | ||| || ||| || ||||| || ||| Sbjct 152258 GTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCCTCAAGCTGCTTACCA 152317 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| || ||| |||| Sbjct 152318 GCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTG 152377 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| |||| |||||| || | ||| | || ||||||||||| || Sbjct 152378 ACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAGGGTC 152437 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 152438 TTGACGAAAATCTGCAT 152454 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | ||||| ||| || ||||| || ||| Sbjct 152486 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCA 152545 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || |||||||||||| ||| || |||| Sbjct 152546 GCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTG 152605 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||| | ||| || |||| || | || ||||| |||||||| Sbjct 152606 ACGTTG-TCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGT 152664 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 152665 CTTGACGAAAATCTGCAT 152682 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || || || || ||||| || ||| Sbjct 152030 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTCCAGCTGCTTACCA 152089 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || |||||||||||| ||| || |||| Sbjct 152090 GCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 152149 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | | |||||| |||| || | || || ||||||||||| Sbjct 152150 ACGTTG-TCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGAGT 152208 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 152209 CTTCACGAAGATCTGCAT 152226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| ||| | |||||| ||| || ||||| || ||| Sbjct 152714 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 152773 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 152774 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 152833 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | || | ||| || | ||| || |||| ||| | || |||||||| Sbjct 152834 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 152886 >seq33 Length=249776 Score = 105 bits (116), Expect = 6e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || |||||| | |||| |||||||| || || || ||| Sbjct 209218 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATG 209159 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| ||| || ||||| ||||| ||| ||||||| | |||||| || Sbjct 209158 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATCGTGTCCGAAGACTCGACCTC 209100 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | ||| || || || || || || || ||||||||||| Sbjct 209099 AAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 209055 >seq185 Length=20677 Score = 102 bits (112), Expect = 8e-17 Identities = 343/526 (65%), Gaps = 31/526 (6%) Strand=Plus/Minus Query 47067 ATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATT---GAAAACGAAAAC 47123 || |||||| | ||| | |||||||| |||||| |||||| ||| || || || Sbjct 17218 ATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGA---- 17163 Query 47124 GTC-ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGG 47182 ||| ||| | || | ||| | | || |||||| || ||||| |||||||||| || Sbjct 17162 GTCGACTTTTGCTCAGCGTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGG 17103 Query 47183 CAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAG 47242 ||||| | || || | || | || | |||||||| | || || Sbjct 17102 TGCTTTTGCCTCCATCTTCTGGCTGCGCAAGCGTGGTTTGATGCCCGGTTTGACTTTCTC 17043 Query 47243 CAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA 47299 ||||||||| ||||| | || || || || ||||| | |||||||| ||| | || Sbjct 17042 CAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGATTTTGCCTGCCTTCTTTTCTC 16983 Query 47300 CAAC----ACTAGAGTCG-ATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGC 47353 || || | | | | ||| ||||| | ||| ||||| | | Sbjct 16982 TCACCTGAACAACCGCCCCAGCAAGCAGTTGATC-----------CAG-GACATCATCAC 16935 Query 47354 CGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGG 47413 || ||||||| |||||||| |||||| | |||||||||| ||| || | | || Sbjct 16934 TGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGG 16875 Query 47414 AATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCA 47473 |||||||| || | |||| | || ||||| || ||||||||||| || || || Sbjct 16874 TATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGC 16815 Query 47474 GCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || ||| | |||| | ||| | || || || ||||| || ||| | ||||| | Sbjct 16814 TCT-CGGTAACGACAAGGTATACAAGGCCTCCAACCCCTTCGACTTCATGGAGAACATCT 16756 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || | || ||||||||||| ||||||||||| || || || || Sbjct 16755 CCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 16710 >seq68 Length=156602 Score = 102 bits (112), Expect = 8e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 123706 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 123765 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || || || || || |||||||||||| ||| || |||| Sbjct 123766 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 123825 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| | |||||| || | ||| | || || || ||||| || Sbjct 123826 ACGTTG-TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 123884 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 123885 CTTGACGAAA 123894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498654302640