Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq26 140 4e-28 seq185 102 1e-16 >seq26 Length=269500 Score = 140 bits (154), Expect = 4e-28 Identities = 941/1500 (63%), Gaps = 35/1500 (2%) Strand=Plus/Minus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || | || | | | || ||||| | ||||| ||| Sbjct 167759 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 167700 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| |||||||||| || |||| || || || ||||||||||| |||| | Sbjct 167699 TCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGG 167640 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 || || |||||| | ||| | | |||| | ||||| || | || ||| || | Sbjct 167639 AGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCAC 167580 Query 116044 TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 116103 | | | | | |||||||| || ||||| |||||||| || || | || || Sbjct 167579 AGGTCACTGGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAG 167520 Query 116104 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCT 116163 ||||| | ||| || | || ||||| | || | ||| | ||||| || || Sbjct 167519 CCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCA 167460 Query 116164 GCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCAAA 116222 ||||| || || ||||| || || | || | || | | ||||| | || ||||| Sbjct 167459 GCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGAG-CCTCGGCAGACTCAAA 167401 Query 116223 CGCGA---GACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 116279 | | || || || | | |||| || ||||| |||||||| | ||||| || Sbjct 167400 AGGCATGCGAAGGGCCAGGA---AGGCATCGGCCAGACCCTGGACACCAACACCAATGGG 167344 Query 116280 GCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAAC 116339 || || | ||| || || || || | || || || ||| ||| || | Sbjct 167343 ACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGAT 167284 Query 116340 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC- 116398 | || | || | |||||||| |||| || || ||||| | | | || | | Sbjct 167283 ACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCA 167224 Query 116399 --TGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 116456 || || | ||| ||| | ||| || || | ||||||| || ||||||| Sbjct 167223 GTTGTTGGTGTAGTCA---ACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCACACAGC 167167 Query 116457 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGT 116516 |||||| | | |||||| ||||| || || || | || ||||| ||| || Sbjct 167166 CACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGT 167107 Query 116517 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGT 116576 |||| |||||| || || ||| ||| || ||||||||| | ||| | || | Sbjct 167106 TCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTT 167047 Query 116577 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT-- 116633 || |||||||| || | | |||||||| | ||| | | || | | || | | || Sbjct 167046 ACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTG-ATGGTAA 166988 Query 116634 GGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCAC 116693 | || | | || || ||| ||||||||| ||| || |||||||| || ||||| Sbjct 166987 GACG--GCCACGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCACCGTA 166930 Query 116694 AGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTC 116753 | || | | || || || | || || | ||| | ||||| || || ||| Sbjct 166929 ACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTC 166870 Query 116754 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 116813 ||| ||||||||||| | || |||||||| || || ||| | ||| ||| |||| Sbjct 166869 AACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAAT 166810 Query 116814 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 116873 || || | || || || || | || | || || | | ||| ||||||||||| Sbjct 166809 CTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGG 166750 Query 116874 TTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCT 116927 |||||||| | || | | || | |||| |||| |||| | || || | Sbjct 166749 CTCCAGGTAAATGGCAAAAGCACCAGGACGCTTG---TTACCACCCTGATCGACGTAACG 166693 Query 116928 CGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 116987 || || || || || || ||||| |||| ||||| | || || || || || Sbjct 166692 AGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCC 166633 Query 116988 CCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCA 117047 |||| || | | || | || | ||| || | ||| ||||| || ||| Sbjct 166632 GGCAATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCAT 166573 Query 117048 CTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 117107 ||| ||||| || || | |||| | | ||||| || ||||| ||| |||| Sbjct 166572 CTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTT 166513 Query 117108 ATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGT 117167 | | | | ||||||| || | || ||| || ||||| |||||||||||||| Sbjct 166512 CATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGT 166453 Query 117168 TGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAG 117225 || | ||||| ||| | | |||| ||||| || ||| || |||| ||| Sbjct 166452 AGGAGAGGCGTGAGTGA--AGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACACGC 166395 Query 117226 GGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCC 117285 || | || || ||||||| | || ||||||| ||||| || || || Sbjct 166394 TCAACATTATCACCCCAGATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCG 166335 Query 117286 ATCAGGATACCATCGAGCCTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | | ||||| ||| | | |||||| |||| |||| |||||||| ||||| || Sbjct 166334 ACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTT-TCCAGGGTCTTGAATCCAAAGTA 166276 >seq185 Length=20677 Score = 102 bits (112), Expect = 1e-16 Identities = 326/499 (65%), Gaps = 14/499 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 16709 GTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCAT 16768 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | ||| | || |||| | ||| | | || Sbjct 16769 GAAGTCGAAGGGGTTGGAGGCCTTGTATACC---TTGTCGTTACCGAGAGCGACCAGA-- 16823 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||| || || ||| |||| ||||||||||| || Sbjct 16824 AGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGA 16883 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || || || | |||| ||||||||||| | || || || | |||| Sbjct 16884 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 16943 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAA 127524 | || || | | | || | ||| | | || ||| || ||||| Sbjct 16944 TCCTGGATCAACTGCTTGCTGGGGCGGTTGT-TCAGGTGAGAGAAAAGAAGGCAGGCAAA 17002 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| |||||||| ||||| ||||| || || || ||||| || ||| ||||| Sbjct 17003 ATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCAT 17062 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | ||| ||||| || |||||| || | ||| | |||||||||||||| ||||| Sbjct 17063 CAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTC 17122 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACT 127703 ||| ||||| |||| ||||||| ||||| | || | |||| | || ||||| Sbjct 17123 AACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAG-TCGACTCCTTGTCAGTAATCCACT 17181 Query 127704 TCATCGCCCACTGTGCCTT 127722 ||| ||||| | ||||| Sbjct 17182 TCAGGGCCCAGTCGGCCTT 17200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504431548760