Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq26 152 8e-32 seq185 91.5 2e-13 >seq26 Length=269500 Score = 152 bits (168), Expect = 8e-32 Identities = 416/616 (68%), Gaps = 16/616 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || |||||||| || | | || | || |||||| | | |||||||||||| Sbjct 168108 CTGGTCAACAGTGAACTGGATAG-GAGCAGCAGC-GGCCTGGGTACGCAGATAGTACATA 168051 Query 203897 CCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || || || ||| |||| | | ||||||| | | |||| || | Sbjct 168050 CCCGTCTTGAGACCAAGCTTCCAACCCGCAAA-GTGCATGCTGGTAATCTTGCCCATAGT 167992 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| |||||||||||||| ||||| || || || |||||| || || || | Sbjct 167991 TGGGTCCTTCATGTGAATGTTCAACGACTGAGACTGATCAAT-AAAGGCACCACGGTCAG 167933 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC-GTCTCTG 204073 | ||||| | | || || ||| ||||||||||| || |||||| ||| | || || Sbjct 167932 CAGCCATCTGAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTGTACAGAGACT-TG 167874 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| || | | || | || ||| || || |||||||| | || | | | Sbjct 167873 ATGTCCGCCGGAATA-CTGGGAATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTT 167815 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCA-GCTCCCGCACCAGGTGGGGGTTGA 204191 | || | | ||| ||||| | |||| | | || | || || | || ||||||| Sbjct 167814 CTTCATGTTGTCCGACCACA-GACCAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGA 167756 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || | || ||| | || | | | ||| ||| | || |||| Sbjct 167755 CAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGA 167696 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || | |||||| | || || ||||||||||| |||||||||| Sbjct 167695 AGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCA 167636 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATC 204370 | |||||||| ||||||| | | | |||| |||||||||| |||| || || Sbjct 167635 GCGAGTTGCGAACACCGT-TCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCACAGG 167577 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 ||||||| | || |||||||||||||||||| ||| || ||| ||| || |||| Sbjct 167576 TCACTGGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAGCCC 167517 Query 204431 TTGTACGTCGGATAAG 204446 | |||||||| |||| Sbjct 167516 TCGTACGTCGAGTAAG 167501 >seq185 Length=20677 Score = 91.5 bits (100), Expect = 2e-13 Identities = 319/492 (65%), Gaps = 27/492 (5%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| || | | ||| || |||||||| |||| ||||| Sbjct 16724 CTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTT 16783 Query 159709 ------CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 ||| || ||| | ||| | |||||||| |||| | | ||| || || Sbjct 16784 GGAGGCCTT---GT-ATACCTTGTCGTTA--CCGAGAGCGACCAGAAGACGGTCGGCGAC 16837 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || ||||| ||| | ||| | ||| ||| || || || || ||| || || Sbjct 16838 GAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAGGGAAGAGC 16897 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTT 159881 || | || |||||||||||||| |||| || || || | || | | || || | Sbjct 16898 CTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTG 16957 Query 159882 CGTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTG 159939 | | | ||| ||| || ||| || || ||||| ||||| || ||| Sbjct 16958 CTTGCTGGGGCGGTTGTTCA------GGTGAGAGAAAAGAAGGCAGGCAAAATCCGTGTG 17011 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || ||||| || |||||||| | ||||||||| | | | || ||||| | ||||| Sbjct 17012 AAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCAAACCACG 17071 Query 160000 CGGTTTG---AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGC 160056 | ||| ||||| || |||| ||||||||||| || ||||| ||||| || || Sbjct 17072 C---TTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGC 17128 Query 160057 CGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGC 160116 || || || || || | || | |||||| | | ||||| ||||| | ||| Sbjct 17129 GGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGC 17188 Query 160117 CCATTCAGCCTT 160128 ||| || ||||| Sbjct 17189 CCAGTCGGCCTT 17200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151611862160