Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq44 141 2e-28 seq68 138 3e-27 seq33 120 7e-22 >seq44 Length=213652 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||||||||| |||||||| || | ||||||||| | | || Sbjct 152462 CGAAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 152521 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| ||||||||||||||||| ||| || Sbjct 152522 CGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCC 152581 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| ||||| | | || || || | Sbjct 152582 TCCTTGTCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGA 152641 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || ||||| || Sbjct 152642 GTGATGGTCTTGCCAGTCAGAGTCTTGACGAAAATCTG 152679 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||||||||| |||||||| |||| ||||||||||| || || Sbjct 152006 CGAAGACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 152065 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| ||||||||||||||||| || || Sbjct 152066 CGGCCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCC 152125 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||| || | | || || || | Sbjct 152126 TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGA 152185 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| ||||| || || || Sbjct 152186 GTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 152223 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || ||||||||||| | ||||||||| | | || | ||||| Sbjct 152243 AGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCC 152302 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || |||||||||||||| ||| || || ||| Sbjct 152303 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCC 152362 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | ||| || | | || || || | || || ||| Sbjct 152363 TGAATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTC 152422 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 152423 TTGCCGGTCAGGGTCTTGACGAAAATCTG 152451 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||||||||| |||||||| || | ||||||||| | | || Sbjct 152690 CGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 152749 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||| || || |||||||||||||| || || Sbjct 152750 CGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCC 152809 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||| || | | || || || | Sbjct 152810 TCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGG 152869 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 152870 GTGATGGTCTTGCCGGTGA 152888 >seq68 Length=156602 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| | || || | ||||| Sbjct 123691 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 123750 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||| |||||||| ||| || || ||| Sbjct 123751 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 123810 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 123811 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 123870 Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621 |||||||| || || || || ||| Sbjct 123871 TTACCCGTCAGGGTCTTGACGAAA 123894 >seq33 Length=249776 Score = 120 bits (132), Expect = 7e-22 Identities = 149/202 (74%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCT 199484 |||||||| |||| |||| |||| ||||||||||| | || | ||||| ||||||| Sbjct 209258 TGGAGAGT-GACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 209200 Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| || ||||| || || |||||||||||||| ||| || || ||||| |||| Sbjct 209199 GCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 209140 Query 199545 TTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | ||| ||| |||| ||||| | | || || || | |||||||||||||||| Sbjct 209139 TGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCG 209080 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| || Sbjct 209079 TAAGGGTCTTAACGAAAATCTG 209058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916147119187