Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq185 205 9e-48 seq68 116 4e-21 seq44 114 1e-20 seq33 113 5e-20 >seq185 Length=20677 Score = 205 bits (226), Expect = 9e-48 Identities = 577/878 (66%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || ||||| | | ||| ||| | ||| || || ||||||||| Sbjct 16725 TTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 16784 Query 132685 GCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| |||| | |||| || |||| || || | |||||| |||||| Sbjct 16785 GAGGCCTTGTATACCTTGTCGTTACCGAG-AG--CGACCAGAAGACGGTCGGCGACGAAC 16841 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 ||||| || | |||| || || | || || ||| |||| || || || || Sbjct 16842 TCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAG-GGAAGAGCCTC 16900 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | ||| ||| |||| || || |||| ||| ||| | | | Sbjct 16901 GGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTT 16960 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | || || ||| | | ||| ||||| || || | ||||| Sbjct 16961 GCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAATCCGTGTGAAGACCCTC 17020 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || || || |||||| ||||||||| |||||||| | || || || || Sbjct 17021 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAACCGGGCATCAAACCACGCTTGCGCAG 17080 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| ||| || || ||||||| ||||| || || ||||| || || Sbjct 17081 CCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCGAAGGCAAC 17140 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || |||| | || || | || ||| | ||||| ||| ||||| |||||||| Sbjct 17141 AAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAATCCACTTCAGGGCCCAGTCGGCCTT 17200 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | ||| || || || || |||||||| || | | | | | || ||| Sbjct 17201 GCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAG--GTATGTGCGCTGAGCAGGC 17258 Query 133161 ACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218 | | ||||||||| || || || ||| | |||||||| | ||||||||| | Sbjct 17259 TCCTTAATGTAGGTGTCAATCAGCAAAGAGTACGTCTCCGAGTGAATGTTCTCCATCATG 17318 Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || || ||||| ||||| || || || | ||| || || || |||||||||| Sbjct 17319 ATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGATCTGAACCTCAGCAGAGAAACGCTCG 17378 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| || ||||| || || ||||| ||||||||| ||||| || ||||| |||| Sbjct 17379 ACCAAGTTCTCGTTAACAATACCGTCAGAGGCGGCGAAGAAGGCAAGAACGTGAGAGATG 17438 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || | || | | ||| ||| | ||||||| | |||||||| ||||| Sbjct 17439 AAGAACTGTTCATCCTTAGTCATGCGGTTGTTCCAGTCGTGAAGATCCTTGGAAAGGTCA 17498 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 | ||||||| ||||||| || || |||||||| ||||||||||| ||| || || Sbjct 17499 ATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTTTTGTACATTTGCCAGATCTCGTGG 17558 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || | || || || | ||| || ||| |||||| || Sbjct 17559 TACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATC 17596 >seq68 Length=156602 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||||||| | || |||||| | | |||| | | Sbjct 123893 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 123834 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 123833 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 123775 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| |||||||||||||| || Sbjct 123774 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 123715 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || |||| || ||| Sbjct 123714 GGAGTCCACTCTCCACCTGGTCCTCCGT 123687 >seq44 Length=213652 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| |||| || ||| || | Sbjct 152682 ATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCTCT 152623 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || ||| |||| ||||| ||||| |||||| | ||||| Sbjct 152622 GACACTATCGACAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCA 152564 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 152563 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAA 152504 Query 38423 CATCCAAAAGGA 38434 ||| || ||||| Sbjct 152503 CATTCAGAAGGA 152492 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| |||| |||||| | || Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| ||||| ||||| || ||| | |||| Sbjct 152166 GATACCATCGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACC 152109 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| |||| || ||||| ||||||| Sbjct 152108 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACA 152049 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || |||| || ||| | | || |||| Sbjct 152048 ACATCCAGAAGGAGTCCACTCTCCACCTGGTTCTCCGTCTTCGTGGTGGCC 151998 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| || ||| || |||| | | | | | | || Sbjct 152888 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 152829 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| || ||| | ||||| ||||| || |||| ||| |||| Sbjct 152828 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 152769 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | ||||||||| |||||||||||| || ||||| Sbjct 152768 AGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATTCAGAAGGA 152720 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||| ||| | || |||||| | | Sbjct 152454 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACCCTTGAGGTCGAGTCGTCG 152395 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| |||||| | ||||| Sbjct 152394 GATACCATTGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAG 152335 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | || || ||| ||||||||| Sbjct 152334 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACGCTCTCGGACTACAAC 152275 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||||| | || || || | || || ||| || | || || Sbjct 152274 ATTCAAAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 152228 >seq33 Length=249776 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || |||||| | Sbjct 209052 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCT 209111 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 209112 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 209170 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 209171 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 209230 Query 38420 CAACATCCAAAAGG 38433 ||||||||| |||| Sbjct 209231 CAACATCCAGAAGG 209244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170542970240