Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq43 183 4e-41 seq9 181 1e-40 seq11 87.8 2e-12 >seq43 Length=216473 Score = 183 bits (202), Expect = 4e-41 Identities = 492/747 (66%), Gaps = 33/747 (4%) Strand=Plus/Minus Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 |||| ||||| | || ||||| ||||| |||||||||||||| |||| || | || | Sbjct 171830 CGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGATCGACTTCTCAAGCT 171771 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 || ||||| || | || || | | | || || || ||||| || || || |||| Sbjct 171770 TCTTGCCGTTGAAGAACTCGGAAAGGAGCTTCTGGATCTTGGGGATACGGGTAGAACCAC 171711 Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGA--------TCTTTGAGTCTCGAAG 7197 |||||| ||||| || | || | || || | | || ||||| ||| | Sbjct 171710 CGACCAGGACGATCTCGTCAACCTGGGACTTGTTAAGGCCAGAGTCCTTGAGGACCGAGG 171651 Query 7198 TGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAA 7254 | || || |||| | | ||| | || | | ||| ||||| || Sbjct 171650 --------CAACGGGCTCCAGAGTGCCAGCGAA---GGCCTTGGAGTTCAGCTCCTCGAA 171602 Query 7255 ACGTGCACGGGTAAT--GGATG-TATAGAAATCAACGCCGTCGTATAACGAATCAATTTC 7311 ||| |||||||| || ||| | | ||| ||| |||||| | | | ||||| || Sbjct 171601 ACGGGCACGGGTGATCTGGACGGTGTAGTCCTCA---CCGTCGAAGAGGGTGTCAATCTC 171545 Query 7312 AATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAA 7371 ||||| || || || ||||| | || ||||| || ||||| || || || || | Sbjct 171544 GATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCAGTCCGGAG 171485 Query 7372 ACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTC 7431 |||||| || ||||| | | |||||||| ||| ||||| || || | || || | Sbjct 171484 ACGACGGAGAGCACGGGCATCACCGGAAAGATCCTTCTTGGTCTTGCGGGTGAAGTCCTT 171425 Query 7432 AGAGAAGT-GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 | ||| ||| ||| || | | |||||||| | |||||| | ||| || || || | Sbjct 171424 CTTGCAGTAGTC-AAGAAGGTTGGTGTCGAAATCCTGACCACCAAGGTGAGTGTCACCAG 171366 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| || ||||| | || | ||| || | ||||| | || || ||||| || |||| Sbjct 171365 CGGTAGCCTTGACGGCGAAAACACCACCCTGGATGTTCAGCAGGGAGACATCGAAAGTAC 171306 Query 7551 CACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCTTATCGAGAC 7607 |||||||||| || | || || ||||| || | ||| ||| | | |||| Sbjct 171305 CACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTCGGACTTGCCGGCACCCAGAC 171246 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAA 7667 |||| |||||||| || || || || || || || ||||| || ||| |||||||||| Sbjct 171245 CGTAAGCGATAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTAAGGCCAGCAA 171186 Query 7668 TAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTA 7727 | | | || || || || || || || || ||||| |||||||| ||||| || | Sbjct 171185 TGGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAA 171126 Query 7728 CGACCGCGTCCGTGACTTTCTTACCGA 7754 ||| || | | ||| ||||| |||| Sbjct 171125 TGACAGCCTTCTCGACCTTCTTGCCGA 171099 >seq9 Length=407631 Score = 181 bits (200), Expect = 1e-40 Identities = 279/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||| | ||| || || || || || | ||||| || |||||||| | ||| Sbjct 286714 TCTTCACCACCAAGGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCATCCTCA 286655 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | |||||||| || ||||||||||| || || || || || ||||| Sbjct 286654 ATGGTAAGGAGGGAAACATCGAAAGTACCACCACCAAGATCGAAGATCAGGACGTTGCGC 286595 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || |||| ||||| || |||||||| ||||| || || || || || || || || Sbjct 286594 TCACCGTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCAGTAGGCTCGTTGATG 286535 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||| || |||||||| | ||||| || || || || || || || Sbjct 286534 ATACGGAGAACGTTAAGACCAGCAATCAAACCAGCATCCTTGGTAGCCTGACGCTGAGAG 286475 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || ||||| || | |||| | ||||||| || || Sbjct 286474 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCCTGGTTGACGGTGGTACCGAGGTAGGAC 286415 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||| | || ||||| || |||||||| || | | || Sbjct 286414 TCAGCAGTCTCACGCATCTTGATCAGGACCATGGAGGAAATCTCCTCGGGGGTGAAGGTC 286355 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || ||||| || || | ||| || Sbjct 286354 TTGGTCTCACCCTTGAACTCAACCTCGATGACGGGCTT 286317 >seq11 Length=386517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/335 (66%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| ||||| || |||| ||| Sbjct 63253 TCGAAATCCTCACCACCAAGGTGGGTGTCACCGTTGGTCGACTTGACCTCGAAGACACCA 63312 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || | | || Sbjct 63313 GACTGGATCTCCAGAACGGAGATATCGAAAGTACCACCACCAAGATCGTAGACAGCGAC- 63371 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| | ||| || |||||||| || | ||| || || || || || Sbjct 63372 -----AACGCGGTCAGCCTCCTTCTCCAGACCGTAGGCCAGAGCGGCGGCAGTGGGCTCG 63426 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | |||||| ||||||||||| || | || || || || || || || Sbjct 63427 TTGACGACACGAAGGACGTTCAGGCCAGAGATCTGACCAGCGTCCTTGGTAGCCTGACGC 63486 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || ||||| |||| | |||| ||| ||| Sbjct 63487 TGGGAGTCGTTGAAGTAGGCGGGGACGGTAACGACGGCGTTCTTGACGGGCTTGGAGAGG 63546 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 63547 TAGGCCTCAGCGGTCTCCTTCATCTTGTTGAGGAC 63581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129933963240