Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq26 188 9e-43 seq185 122 1e-22 >seq26 Length=269500 Score = 188 bits (208), Expect = 9e-43 Identities = 885/1392 (64%), Gaps = 29/1392 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || || |||||||| || || || |||| |||| Sbjct 166342 CCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCGTGTT 166401 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||| || ||| | ||||| | | |||| ||||| | || ||||||||| Sbjct 166402 CTGGAAACTTACAATCTCATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACCCTCTTC 166461 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || || || | || || ||| | | | | |||||||| Sbjct 166462 AACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAGGAC 166521 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || || | || |||| ||||| ||||| ||| ||| ||| Sbjct 166522 AGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGGGT 166581 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 |||||||| | || || | || | || | | || |||| || || || Sbjct 166582 GGTATCGGTCTCAACGCTCACCGTATCCGTGCTACCGGTTCCTATATTGCCGGCACCAAC 166641 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | |||||| |||| ||||| || || || || ||| || || || || Sbjct 166642 GGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCTCGTTACGTC 166701 Query 111972 AACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | || | ||| | |||| || || | || | || || ||||| |||||| Sbjct 166702 GATCAGGGTGG---TAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCAC 166758 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGGT 112083 || ||| | | ||||||||||| | || ||||| ||| | |||||| |||| | Sbjct 166759 GCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAGATTCGCGCT 166818 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 |||||| | ||| || || ||||| || ||| | ||||||||| | |||||| ||| Sbjct 166819 --CGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTTGAGAAGA 166876 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| | ||| | ||| | || || || || || || | | ||| |||| Sbjct 166877 ACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGTTACGGTG 166936 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAGAAAGTCGGGCGACTGCGACGG 112260 |||| ||||| || || ||| ||||||||| |||| | || || || || || Sbjct 166937 AGGAATTTGAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGT-GGCCGTCTT--ACCA 166993 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | ||| | || | ||||| | |||||||| | |||| || |||||||||| || Sbjct 166994 TCAAGGCT-CAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAGACTGGTAACCCT 167052 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||| | ||||| || ||| |||| |||||||| || ||||| |||| || Sbjct 167053 TTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGGGAACTATT 167112 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||||||||||| || || || || | || | | |||||| ||||||| Sbjct 167113 CGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTGGCTGTG 167172 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGA 112498 || ||| | || || | |||||||| | ||| || | || |||| | | || Sbjct 167173 TGCAACTTGGCGTCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGC-TACGA 167231 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | || || ||||| || || || ||| ||| | ||| | | ||||| Sbjct 167232 CTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTATCATTGA 167291 Query 112559 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | || ||||| |||| || || || || ||| | |||||||| ||||| Sbjct 167292 TGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGCAACATGCGTCACCGTCCCATTGG 167351 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGA 112678 | | |||||||| ||||| || |||| ||| | |||| | ||||| || | Sbjct 167352 TGTTGGTGTCCAGGGTCTGGCCGATGCCTTCCTGGCCCTTCGCATGCCTTTTGAGTCTGC 167411 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 ||| || | |||| || || || ||||| || || ||||| ||||| ||||| Sbjct 167412 CGAGGCTCGTCAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCTCTGGAGGC 167471 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 | || | || | ||||| ||| | || || | ||||| ||||| | || Sbjct 167472 TTCATGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGCTCTCCTGTCTC 167531 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TACGACTG 112855 || || | ||||| || || ||||||| | || | || || | || | || || Sbjct 167532 TCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACGCCCAG--TGACCTGTGGGATTG 167588 Query 112856 GGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 | || |||| ||||| | || ||| |||| ||| |||| ||| || | |||| || Sbjct 167589 GAACTCTCTGAAGGAGCAGATTAAGCAGAACGGTGTTCGCAACTCGCTGCTCCTGGCGCC 167648 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||| || || || || | || || ||||||| || || ||||| || || ||||| Sbjct 167649 CATGCCCACTGCGTCAACTTCCCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTACAC 167708 Query 112976 GACGAACATCTA 112987 ||||||| || Sbjct 167709 TTCGAACATTTA 167720 >seq185 Length=20677 Score = 122 bits (134), Expect = 1e-22 Identities = 257/375 (69%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 101962 CTGATGAGGTGCA-ATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAATGAA 102020 ||| |||||| || |||| ||||||| | | ||||| | || || | |||| ||| | Sbjct 17367 CTGCTGAGGTTCAGATCC-CTGAAGCCCGTTGCTTCTACG-GTTTCCAGATCATGATGGA 17310 Query 102021 -ATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGA 102079 | | || |||||| ||| | || || |||| || |||||||| |||| | Sbjct 17309 GAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCCTGCTCA 17250 Query 102080 GAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTG 102139 | | | ||||| | ||||| | || |||| || |||| || || || || Sbjct 17249 GCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTG 17190 Query 102140 GGCTATGAAGTGGTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATT 102196 ||| |||||||| || | |||| ||||| || ||||| |||| || | || || Sbjct 17189 GGCCCTGAAGTGGATTACTGACAAGGAGTCGACTT---TTGCTCAGCGTCTTGTTGCCTT 17133 Query 102197 TGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAA 102256 || ||||||||||||||||||||||||| | || | | || | ||||| || Sbjct 17132 CGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTGCGCAA 17073 Query 102257 GCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACT 102316 ||| ||| | ||||| ||| | |||||||||||||||||||||||||| ||||| || Sbjct 17072 GCGTGGTTTGATGCCCGGTTTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCT 17013 Query 102317 CCACCAAGAGTTTGC 102331 ||| || ||||| Sbjct 17012 TCACACGGATTTTGC 16998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739598899920