Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq182 120 4e-22 >seq182 Length=23175 Score = 120 bits (132), Expect = 4e-22 Identities = 340/512 (66%), Gaps = 28/512 (5%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||| | |||||| |||||||| || || | || || | ||| | ||||| ||||||| Sbjct 3006 AATGTGACGATCAAAACGACCAGGACGCATGAGCGCCTTATCCAAGATATCCGCACGGTT 2947 Query 11556 TGTAGCGGCAATGACTACAATGCCAGT--CTCATTGTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | || | || ||||| | || | | ||| |||||||||||| || || ||| Sbjct 2946 GGTACCAGCCAAAACAACAAT--CTGTTCCGCCGTGTTGAAACCGTCCATCTCCGTAAGA 2889 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTT---GGAGGGCATAC-------CACCTGC 11663 | |||||| | |||| |||||||||||||| ||||| |||| Sbjct 2888 ATCTGGTTAAGCGTCGACTCACGCTCATCGTTACCACCACCCATACGGTTCGAGTCCTGA 2829 Query 11664 CGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGC 11723 ||| ||| |||| | || ||||||||||| || || | ||| || ||| ||| Sbjct 2828 CGA--GCT--CTACCAATGGCATCAATCTCATCAATAAAGATGATGCAAGGTGCGTTCTT 2773 Query 11724 ACGTGCCTGT-TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAA 11782 || | |||| |||| | ||||| || ||| || || ||||| || |||||||||| Sbjct 2772 CCGCG-CTGTCGCGAACAAATCACGCACTCGCGAAGCACCCACACCAACAAACATCTCAA 2714 Query 11783 CGAAGTTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGA 11841 || | | ||| ||||||||| || || || ||||| || || | || Sbjct 2713 TAAACTCAGATCCAGAAACACTGAA-AAACGGCACCCCGGACTCTCCGGCTGTCGCCTTG 2655 Query 11842 GCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTG 11901 || || | |||||||| || ||||| | || | || | || || | || |||||| Sbjct 2654 GCCAGCAACGTCTTACCAGTTCCAGGCGGTCCCGAAAGGATAGCACCCCTCGGAATCTTG 2595 Query 11902 GCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGT 11958 ||||| | |||| | |||||||||||| ||||| | ||||| |||| || Sbjct 2594 GCACCGAGGCGGACAAACT---TCTCAGGCTTCTTCAGGAACTGCACAAACTCCATAATC 2538 Query 11959 TCCTCCTTGGCGGAGTCGATACCCTCAACATC 11990 ||| ||||||| || || ||| | ||||| Sbjct 2537 TCCACCTTGGCCTCATCCATGCCCGCCACATC 2506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973342245800