Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq26 201 1e-46 >seq26 Length=269500 Score = 201 bits (222), Expect = 1e-46 Identities = 933/1465 (64%), Gaps = 43/1465 (3%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||||| ||||| || || ||||| || || ||||||| || || | || || Sbjct 167720 TAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGAC 167661 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || |||| | || ||| |||| ||| || | ||| || | ||| Sbjct 167660 GCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCC 167601 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || ||| | ||| || | | | | || || | || | ||||||| || || |||| Sbjct 167600 TTCAGAGAGTTCCAATCCCACAGGTCA-CTGGGCGTGACAT-CCCACATGTCGAACTGAA 167543 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | || || || ||||| ||||| | ||| || | ||||| | |||| | Sbjct 167542 GGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGA 167483 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || |||||||| | ||||| || ||||| || ||||| | || | || Sbjct 167482 TATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCT 167423 Query 106233 CCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 || || | || ||||| |||| || | || || |||| || || Sbjct 167422 GACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGG-----CATCGGCCAG 167368 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 ||| || ||||| | |||||| || | ||| ||||| || || || || |||| Sbjct 167367 ACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAAC 167308 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 || || || ||||||| ||||| | || | ||||| ||| |||| || Sbjct 167307 AGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATC 167248 Query 106408 ATGAAGTTTTTCATAATCAAA--AGT-GCGAGTCTCTTCATTGACATACTTTGGAAGGGC 106464 || || || | | || | ||| | || | ||| ||| | || || || Sbjct 167247 GTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---ACAAAGGCAGGGAGAGC 167191 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 | || ||||| ||||| |||||| |||||| | | |||||| | ||| || || Sbjct 167190 AAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGT 167131 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 || | ||||||||| ||| || |||| ||||| ||||||||||| |||||| Sbjct 167130 GCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTG 167071 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||||| | |||| | || | || ||||||||||| | | ||||| || | ||| Sbjct 167070 ATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCA 167011 Query 106645 CA-CATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGT 106700 || | || | | || | |||| | |||| ||||| ||| ||||||||| || Sbjct 167010 CAGCTTCTGAGCCTTG----ATGGTAAGACGGCCACGTCCTTCCCGCTCGTACTTGACGT 166955 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 106760 | || || ||||| |||||||| || | | || || || || || || | Sbjct 166954 AAAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACA 166895 Query 106761 AAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 106820 || | ||||| || || |||||| ||||||||||| | || || |||||||||| Sbjct 166894 TGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGG 166835 Query 106821 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 106880 || | ||| | | ||| ||| || | ||| ||||| || | ||||||| Sbjct 166834 CAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGA 166775 Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 106939 |||| | | ||| |||||||| ||||| || || | || | || || ||||| Sbjct 166774 ACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---AGGACGCT 166718 Query 106940 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 106994 ||| | |||| || || || || ||| || || || || ||||| |||| || Sbjct 166717 TGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAA 166658 Query 106995 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 107054 |||| | || ||| || || || |||| || | || | | | || Sbjct 166657 TACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAG 166598 Query 107055 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 107114 || | || ||||| || ||| ||| ||||| ||||| | | || || ||| Sbjct 166597 CGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 166538 Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174 ||||||| | ||| ||||||||| || | | | |||||| || | ||| || Sbjct 166537 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 166478 Query 107175 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACAT 107232 || ||||| || ||||||||||| || | |||||| ||| | | |||| ||||| Sbjct 166477 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA--AGAACTTGCTCGACAT 166420 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 | ||| || |||| ||| |||| | || || ||| |||| || ||||| Sbjct 166419 GAGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACACG 166360 Query 107293 CATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCT 107351 ||||| ||||| || || || | | ||||||| ||| |||| | || ||| Sbjct 166359 CATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCT 166300 Query 107352 TCTCAAGGGTTTTGAGACCAAAGTA 107376 | || ||||| |||| |||||||| Sbjct 166299 T-TCCAGGGTCTTGAATCCAAAGTA 166276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978137711640