Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq44 107 1e-18 seq33 93.3 3e-14 >seq44 Length=213652 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| | || |||| || ||||| || || ||||| Sbjct 152492 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 152551 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 152552 ATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTG 152611 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| |||| || ||||| || || || |||||||| || Sbjct 152612 TCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACG 152671 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 152672 AAAATCTGCATA 152683 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 152017 AACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCGTCCTC 152076 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 152077 CAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 152136 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || | ||| || |||| || ||||| || Sbjct 152137 GATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTT 152196 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || ||||||||||| |||||||||||| Sbjct 152197 TCCGGTCAGAGTCTTCACGAAGATCTGCATA 152227 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| ||| || || |||||||| |||||||| || | || |||| || Sbjct 152245 AACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCATCCTC 152304 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 152305 AAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 152364 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||||| ||||| || | || || | ||| | ||| || || | ||| |||| Sbjct 152365 AATCTTCGACTTGAC--AT--TGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGG 152420 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || || ||||| || || ||||||||| Sbjct 152421 TCTTGCCGGTCAGGGTCTTGACGAAAATCTGCATA 152455 >seq33 Length=249776 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| | || |||| |||||||| || || || || || Sbjct 209242 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 209183 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 209182 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 209123 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || | ||| || || | ||| || || || ||||| || ||||| || || Sbjct 209122 ATCGTGTCCGAAGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 209063 Query 34974 ATCTGCATATT 34984 |||||||| || Sbjct 209062 ATCTGCATCTT 209052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632171713608