Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26 223 6e-53 seq185 170 4e-37 >seq26 Length=269500 Score = 223 bits (246), Expect = 6e-53 Identities = 890/1384 (64%), Gaps = 29/1384 (2%) Strand=Plus/Minus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| ||||| | | ||| | | |||||||| ||| |||||||| Sbjct 167763 AGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTA 167704 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||||||||| | ||| || ||||||||||| || Sbjct 167703 AGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGC 167644 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || || ||| | || |||| || || | || || || | || Sbjct 167643 CAGGAGCAGCGAGTTGCGAACACCGTTCT-GCTTAATCTGCTCCT----TCAGAGAGTTC 167589 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 | ||| ||| |||||| | | | || | ||||||||| ||||| | ||| || | Sbjct 167588 CAATC--CCA--CAGGTCACTGGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTG 167533 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 || || ||||| ||| | ||||| | || | | || | ||||| || Sbjct 167532 AGAGACAGGAGAGCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCATGA 167473 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 |||| ||| ||||||| ||| ||||| || || |||| | ||||||||| ||||| Sbjct 167472 AGCCTCCAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGAGCCTC 167413 Query 213266 TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGAT 213325 | ||| || ||||| | | |||| |||| ||||| |||||||| || | Sbjct 167412 GGCAGACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAAC 167353 Query 213326 GCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCA 213385 || ||||| | ||| | || ||| || | ||| | | ||||| ||| Sbjct 167352 ACCAATGGGACGGTGACGCATGTTGCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCAC 167293 Query 213386 GTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTG 213445 || ||||| ||| | ||||||| | || |||||||||| | ||| | || | Sbjct 167292 ATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAA 167233 Query 213446 ATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCA 213505 | | | || | || | ||||| |||| || || | |||| |||||| Sbjct 167232 GTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCA 167173 Query 213506 AACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCG 213565 || |||||||| | || | |||||| || ||||| ||||| |||||| | || Sbjct 167172 CACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCG 167113 Query 213566 GATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGA-ATCCTTGTAGAGCATG 213623 || || |||||||||| ||||| ||| ||||| | |||| ||||||||| | |||| Sbjct 167112 AATAGTTCCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGTGATCCTTGTACAACATG 167055 Query 213624 TAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTG 213683 | ||| || ||||| ||| | |||| || ||| || | | |||||| Sbjct 167054 AAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTG 166995 Query 213684 ACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTC 213742 | | ||| || || | | | |||||||| |||| || | | ||||| Sbjct 166994 ATG----GTAAGACGGCCACGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTC 166939 Query 213743 GTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCC 213801 | || | | | | | || || || || ||| ||||||||| |||| || | Sbjct 166938 CTCACCGTAACAATCAGCCAAG-CCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGC 166880 Query 213802 CGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCC 213860 ||| | |||| || | || |||||||| || |||| |||||| || ||||| || Sbjct 166879 CGTTCTTCTCA-ACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCG 166821 Query 213861 CTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCC 213920 | | | |||| ||| || ||| || || || || || || ||||| | || Sbjct 166820 CGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCA 166761 Query 213921 GCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCC 213977 |||||||||||||||| ||| |||||||| || || || | |||| || ||||| || Sbjct 166760 GCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCG 166701 Query 213978 ACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCG 214037 || | || | ||||||| ||||| | || || | ||||| || ||| Sbjct 166700 ACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCG 166641 Query 214038 TTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCCCTATGC 214095 ||||| || || ||||| || |||| || | | | || | | |||| || || | Sbjct 166640 TTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGA--CCGATAC 166583 Query 214096 CACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGC 214155 |||| || |||||||||||| || ||| | | | || || ||| || | || | Sbjct 166582 CACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATAC 166523 Query 214156 TGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGT 214215 |||| || | | || | |||||||||| || ||||| ||| | | || | || Sbjct 166522 TGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGT 166463 Query 214216 TGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCA 214275 |||| || || || ||| || | | |||||| | || | ||| |||| || |||| Sbjct 166462 TGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCA 166403 Query 214276 GGAC 214279 | || Sbjct 166402 GAAC 166399 >seq185 Length=20677 Score = 170 bits (188), Expect = 4e-37 Identities = 484/736 (66%), Gaps = 17/736 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 16706 CTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTC 16765 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||||||| ||||||||||| | || || ||| |||| || | |||| | Sbjct 16766 CATGAAGTCGAAGGGGTTGGAGGCCTTGTATACCT-TGTCGTTACCGAGAGCGACCAGAA 16824 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| ||||||| || | ||||||| |||||| || | || | Sbjct 16825 GACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAG 16884 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || || ||||||||||| || ||||| || | || | Sbjct 16885 CGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGT 16944 Query 48078 GCTT----AAC-GCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 || ||| || | ||| || | ||||| |||||| | | || | || Sbjct 16945 CCTGGATCAACTGCTTG---CTGGGGCGGTTGTT---CAGGTGAGAGAAA---AGAAGGC 16995 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 ||||||| ||| |||| | || || || || ||| ||| |||||||||| | || Sbjct 16996 AGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAAC 17055 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | || | || |||||||| || | || |||| ||||||||||||| Sbjct 17056 CGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAGA 17115 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || || | || | |||| | | |||||| | | Sbjct 17116 TACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGTAA 17175 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || |||||||| ||||| ||||| || || || || ||||| || Sbjct 17176 TCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGA 17235 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 |||| | ||| || | | | ||| || ||||| | |||| | |||| ||| Sbjct 17236 AGAGGTATGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGAGTACGTCT 17295 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||| ||||||||| | ||| ||| | || Sbjct 17296 CCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGATCT 17355 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||||| | ||| | || ||||| || || || || || || || || | Sbjct 17356 GAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGCGGCGA 17415 Query 48552 AGAAGGCAAGGACATG 48567 |||||||||| || || Sbjct 17416 AGAAGGCAAGAACGTG 17431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528596458240