Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26 212 1e-49 seq185 143 5e-29 >seq26 Length=269500 Score = 212 bits (234), Expect = 1e-49 Identities = 828/1280 (65%), Gaps = 55/1280 (4%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAG 221477 ||| ||||||||||| |||||||| |||||| ||||||||| || | ||||||| || Sbjct 167466 CAGAGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTGACGAGCCTCGGCAG 167408 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | || ||||| || || | | ||| | |||||||| ||||| || || | ||| | Sbjct 167407 ACTCAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAA 167348 Query 221538 TGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||| | ||| | | ||||| | ||| || || || || || ||| || || Sbjct 167347 TGGGACGGTGACGCATGTTGCTGTTCCGG--GCCTCGACAACAGGGTAGTGGTTCACATC 167290 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 || | | ||| | ||| | | || || || ||| |||||||||| Sbjct 167289 AATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGG----- 167235 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 || ||| || || || | | || ||||| || || |||| || Sbjct 167234 -------AAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGGGAGAGCAAGCGACGC 167182 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| ||||| |||||||| || | |||| || ||||| || || ||||| Sbjct 167181 CAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTT 167122 Query 221776 GCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCTT 221832 | | ||| || || ||||||| || || ||| |||||| ||| ||| | ||||| Sbjct 167121 G--GAACTGCGAATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTG-CAGTGATCCTT 167065 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| | ||| || || ||||||||| |||||| ||||||| | ||| || | Sbjct 167064 GTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCT- 167006 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCG--GTATAGA 221948 |||| || | | || ||| || | || || || ||| | ||| ||| Sbjct 167005 TCTGAGCCTTGATGGTAA----GACGGCCACGTCCTTCCCGCTCGTACTTGACGTAAAGA 166950 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | |||| | |||||||| || ||| ||| || ||| | ||| ||||| | Sbjct 166949 GCCT--CAAATTCCTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGA 166892 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||| | ||| | | || | || |||||| | || ||||||||||| || Sbjct 166891 GGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAA 166832 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || | ||| | | || ||||||| |||| ||| |||| || || | |||| Sbjct 166831 GGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACT 166772 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | |||||||||||||||||||| || | ||| | ||| || || |||||||| | Sbjct 166771 CAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTAC 166712 Query 222189 CACCCTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| | | | | || || | ||||||| || || | || || | Sbjct 166711 CACCCTGATCGA----CGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATA 166656 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 ||||| || |||||||||||| ||| || | |||| || | || ||| | | Sbjct 166655 CCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCAC---GGATACGGTGA 166599 Query 222305 GACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || ||||||||||| || || |||||||| || ||| ||||||| || || Sbjct 166598 GCGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCA 166539 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| || || ||| ||||||||| | || | || || || || || | ||||| Sbjct 166538 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGC 166479 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || || |||||| || || || ||| |||||| || ||| | || ||||| Sbjct 166478 TGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 166419 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 |||| ||| || || | || | | | || || ||| || | | | || | Sbjct 166418 AGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCG-ACAGCAACACG 166360 Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 ||| ||||| ||| || | ||| ||| || | |||| |||| ||||| ||| Sbjct 166359 CATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGA--AGGTAAGAT 166302 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 ||||||| |||||||| |||||||| | || ||||| | | | | || | ||| Sbjct 166301 CTTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAGTCACGGTCATAGACAATGGCC 166242 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||||||||| |||||| Sbjct 166241 GAGTCCAGCTCTTCCTTGTG 166222 >seq185 Length=20677 Score = 143 bits (158), Expect = 5e-29 Identities = 384/573 (67%), Gaps = 17/573 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | |||||||| ||||| | ||| |||||||||||| |||||||| Sbjct 17554 GAGATCTGGCAAATGTACAAAAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAC 17495 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT-AT--CCAAAGACGAGCAGCATTTTCTC 25590 || ||||||| | ||| |||| || | || | || || || ||| || || Sbjct 17494 CTTTCCAAGGATCTTCACGACTGGAACAACCGCATGACTAAGGATGAACAGTTCTTCATC 17435 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 |||| | || ||||| || |||||||| ||||| || |||||||| || |||| Sbjct 17434 TCTCACGTTCTTGCCTTCTTCGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGTCGAG 17375 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | || || ||| | || ||| || ||||||||||||||||| Sbjct 17374 CGTTTCTCTGCTGAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGATCATG 17315 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || || || | ||||| ||| ||| | ||| | || ||||||| || Sbjct 17314 ATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGGAGCCT 17255 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGG 25828 || || | | || || || ||||| || ||| || ||| |||| | |||| Sbjct 17254 GCTCAGCGCACATAC-CTCTTCAACGCCATTGA-CACTATTCCCTGCATTCGCCGCAAGG 17197 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| |||||||||| | | | || | | | || |||| |||| || || Sbjct 17196 CCGACTGGGCCCTGAAGTGGATTA-CTGACAAGGAGTCGACTTTTGCTCAGCGTCTTGTT 17138 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946 ||||| || ||||| ||||| ||||| ||| ||| | ||||| ||||||||||||| Sbjct 17137 GCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCTTCTGGCTG 17078 Query 25947 --CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 ||||| || |||||||| || ||||| ||||||||||| ||| | || Sbjct 17077 CGCAAGC---GTGGTTTGATGCCCGGTTTG-ACTTTCTCCAACGAGCTTATCTCTCGTGA 17022 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| |||| |||||||||||||| || Sbjct 17021 TGAGGGTCTTCACACGGATTTTGCCTGCCTTCT 16989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840608587840