Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq26 181 1e-40 >seq26 Length=269500 Score = 181 bits (200), Expect = 1e-40 Identities = 931/1468 (63%), Gaps = 45/1468 (3%) Strand=Plus/Plus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| |||| ||||| || |||| || | |||| ||| ||||||| | | Sbjct 166276 TACTTTGGATTCAAGACCCTGGA-AAGATCTTACCTTCTCAAGCTTGATGGCAAGATTGT 166334 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| ||| || || | |||| Sbjct 166335 CGAGCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGA 166394 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| |||| || ||| | ||||| |||| | | ||| |||||| | || Sbjct 166395 GCGTGTTCTGGAAACTTACAATCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCT 166452 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||||||||| || ||||| || || ||| | || |||||| | | | || Sbjct 166453 ACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATG 166512 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| ||| | |||||||||| || || | | ||||| ||||| ||| Sbjct 166513 AAGGAGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAG 166572 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||| || ||||| || | || || | | | || | || |||| Sbjct 166573 ATGGCGGGTGGTATCGGTCTCAACGCTCACCGTATCCGTGCTACCGGTTCCTATATTGCC 166632 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| || | |||||| |||| ||||| || || || || ||| || Sbjct 166633 GGCACCAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCT 166692 Query 75563 CGCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAA 75616 || || || |||| ||| || |||| | || | | || | ||| |||| Sbjct 166693 CGTTACGTCGATCA---GGGTGGTAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAG 166749 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | ||||||||||| | || ||||| ||| | || ||| Sbjct 166750 CCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTCCGGAAGAACCACGGTAAGGAGGAG 166809 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 ||| | | ||| | || |||||||||| || || | ||||||||||| ||| Sbjct 166810 ATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCCGATTTGTTCATGAAGCGTGTT 166869 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 ||| || || ||||| | || | || || || || || || | | || Sbjct 166870 GAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGT 166929 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 |||||||| ||||| || || ||| ||||| || ||| || | | | || Sbjct 166930 TACGGTGAGGAATTTGAGGCTCTTTACGTCAAGTACGAGCGGGAAGGACGTGGC----CG 166985 Query 75857 ACTGTACCAGC----CGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 || ||||| | | | || | | ||| | |||||||| || | ||||||||||||| Sbjct 166986 TCT-TACCATCAAGGCTCAGAAGCTGTGGTATGCTATTCTGGAAGCTCAGACGGAGACTG 167044 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | | || | ||| | ||||||||| || ||| ||||||||||| ||||| ||| Sbjct 167045 GTAACCCTTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAGAAGAACCTGG 167104 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 |||| || || || || |||||||| || ||| | |||||| | | |||||| Sbjct 167105 GAACTATTCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGG 167164 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC- 76090 |||||| ||||| ||||| || | || || || | ||| ||| | || | Sbjct 167165 TGGCTGTGTGCAACTTGGCGTCGCTTGCTCTCCCTGCCTTTGT---TGACTACACCAACA 167221 Query 76091 ACT--TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 ||| | || | | || || || || |||| ||| ||||| | || | |||| Sbjct 167222 ACTGCTACGACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACC 167281 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 | ||||||| || || || |||| || || || || ||||| ||| Sbjct 167282 GTATCATTGATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGCAACATGCGTCACC 167341 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA- 76267 | || |||||| | ||||| || ||||| || |||| || || | || |||| Sbjct 167342 GTCCCATTGGTGTTGGTGTCCAGGGTCTGGCCGATG-----CCTTCCTGGCCCTTCGCAT 167396 Query 76268 ----TTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 ||||| || | || || || | || | ||||| || ||||| || || Sbjct 167397 GCCTTTTGAGTCTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTCGAGACCATTTACCA 167456 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 ||| | |||||||| || || | |||| | ||||| | || ||| | || Sbjct 167457 CGCTGCTCTGGAGGCTTCATGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGA 167516 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 ||| ||||| | || || || | |||||||| || ||||||| | || | || || | Sbjct 167517 GGGCTCTCCTGTCTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACGCCCAG-T 167574 Query 76444 CAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | | || ||| | ||| ||||| | || ||| |||| ||| |||| ||| Sbjct 167575 GACCTGTGGGATTGGAACTCTCTGAAGGAGCAGATTAAGCAGAACGGTGTTCGCAACTCG 167634 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || | |||| || ||||| || || || || | || || ||||||| || || ||| Sbjct 167635 CTGCTCCTGGCGCCCATGCCCACTGCGTCAACTTCCCAGATTCTGGGTAACAACGAGTGC 167694 Query 76562 TTTGAACCATACACAACAAACATCTACC 76589 || || || ||||| | ||||| |||| Sbjct 167695 TTCGAGCCTTACACTTCGAACATTTACC 167722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566907979680