Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq185 129 9e-25 >seq185 Length=20677 Score = 129 bits (142), Expect = 9e-25 Identities = 365/554 (66%), Gaps = 11/554 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| ||||| | ||| ||||| | || || | ||||| || || || Sbjct 16995 CAGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAAA 17054 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | ||| | || ||||| || || || || ||| || ||| ||||| Sbjct 17055 CCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAG 17114 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 ||||||||||| ||||| || | | | | ||||||| | | | ||| ||||| Sbjct 17115 ATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTG-TCAGT 17173 Query 18338 A-TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 | |||| || | ||||| || | | || || || ||| | || || || || Sbjct 17174 AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTT 17233 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCT--TTTATATAAGTGTCGATTAACAAAGAATAC 18454 || | | || | || | | || || || || ||||| || | |||||| ||| Sbjct 17234 GAAGAGGT-ATGTGCG-CTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGAGTAC 17291 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGG 18513 | || || || ||| | ||||| ||||| |||| || || | | || || ||| Sbjct 17292 GTCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGG 17351 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 || | ||| ||| | | || | || ||||| ||||| ||||| |||||||||| | Sbjct 17352 ATCT-GAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGC 17410 Query 18574 TGCGAAAAATGCCAAAACAT---ATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 ||||| || || | ||| | | | | ||| |||| || ||| | || | ||||| Sbjct 17411 GGCGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGTTCATCCTTAGTCATGCGGTTGTT 17470 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| || | | ||| || || || |||| || || | ||||| ||||| | ||||| Sbjct 17471 CCAGTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGC 17530 Query 18691 CTGTTTGTACATTT 18704 || ||||||||||| Sbjct 17531 CTTTTTGTACATTT 17544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731868697427600