Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq26 194 5e-44 seq43 114 4e-20 seq144 104 7e-17 seq30 91.5 4e-13 >seq26 Length=269500 Score = 194 bits (214), Expect = 5e-44 Identities = 578/884 (65%), Gaps = 17/884 (2%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||||| ||| ||||| ||||| || || || | ||||||| Sbjct 167152 CGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTCT 167093 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | ||| || ||||||||| | ||| | ||| | || |||||| ||| Sbjct 167092 GGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCT 167033 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || |||||||| ||| || | | || || || | | |||| Sbjct 167032 GAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTT 166973 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 || ||| || || | || || | | |||||||||||||||||| || |||| Sbjct 166972 CCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCACCGTAACAATCAGCCAAGCCAG 166913 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCAT 155920 |||||| | |||||| | || | ||| || || || | | |||||| ||| Sbjct 166912 GGCACTCGTTGGGGCACATGAGGGTCCA--TTCGCCGTTCTTCTCAA---CACGCTTCAT 166858 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||| | ||| ||| | || | || |||||| | || Sbjct 166857 GAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACC 166798 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| |||||||| || || | ||| || | ||||| || |||||||| || || Sbjct 166797 GTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAAT 166738 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| |||| | |||| ||||||||||| || || |||||||| |||||||| Sbjct 166737 GGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTATTGAA 166678 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 ||||| |||||||||| |||||| || || || || ||||| ||| ||||| ||||| Sbjct 166677 GACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGAACC 166618 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216 | | || | | ||| | || || |||||||| | |||| || || || || Sbjct 166617 GGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCG-CCATCTTGGAGATCATAG 166559 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 | || ||| | |||| | |||||||| ||| || || | ||| || | Sbjct 166558 CACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGA 166499 Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336 |||| ||| | ||||| | || || || |||||||| || ||||| | || ||| Sbjct 166498 AGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAG 166439 Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCG 156395 | || |||| | ||||| || ||| || ||| || ||||| |||| |||| Sbjct 166438 TGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACACGCTCAACATTATCACCCC 166379 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 | |||| || || || | ||| ||| |||||||||||||| |||||| |||||| Sbjct 166378 AG-ATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCA 166320 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | | |||||| || || || || || || Sbjct 166319 AGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTGAATCCAAAGTA 166276 >seq43 Length=216473 Score = 114 bits (126), Expect = 4e-20 Identities = 184/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||| ||||| || | || || ||||| || || || || Sbjct 192003 CTTGACCAGACGACGTTGAATGTAACCTGTCTCGGCAGTCTTGACAGCAGTGTCGATAAG 192062 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAA 302701 ||| |||||||| |||| || |||||||| | ||| | || || || || | | | Sbjct 192063 ACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCA-CTGGGAGTGAGACCACGGAGAT 192121 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | ||| |||||||||||||||| | ||||||||| | || |||||| || || || | Sbjct 192122 AAGAGTTCTCAACGAAACCACGAGACTCGGGCGAGTAATCATCCTTGGTGAAATGAGGGA 192181 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | || || | ||| | || |||||||| || ||||| | || || || | Sbjct 192182 GTGTGCGGTACTTGAAACCGAAAGGAATACGCTTACCCTCAACAATTTGTTGACCGACTA 192241 Query 302822 ACGAAATCATCTGCGAAATATT 302843 || | ||||||| ||||| || Sbjct 192242 GCGCAGTCATCTGAGAAATGTT 192263 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/141 (74%), Gaps = 5/141 (4%) Strand=Plus/Plus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| |||||| ||||| | || ||||| ||||| |||||||| Sbjct 191209 AGAATTTCCTTCAA-ACGGGGGACACCGAGAGTAACGTTCTTACTGGAC---ACACCAGC 191264 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| |||||||| ||||| || | || |||| ||||||||||| || || || | Sbjct 191265 AAAATGGAAAGTGTTCAGGGTCATCTGCGTAGCAGGCTCACCAATTGACTGGGCAGCCAA 191324 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| || || || Sbjct 191325 CACACCAACCATCTCACCGGG 191345 >seq144 Length=50355 Score = 104 bits (114), Expect = 7e-17 Identities = 126/168 (75%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| ||||||| | ||||| ||||||||| ||||||||||| | ||| |||| Sbjct 3999 GAAGCTGAGAGGCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCTAGACGGAGAC 3940 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA-TAGGACCGATG 251592 |||| ||||||| | ||| || | |||||||| || | | | || ||||||| || Sbjct 3939 CACCCTCGCGAGAACGACCTTCTGTTGGCTGACGGGTCA-ACGAGGCACGAGGACCGGTG 3881 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || || ||||| | ||||| ||||||||||| |||||| Sbjct 3880 GACCGAGAGTGCATTTTATCTTGGACCATGTGCTTGAGACGTTGGTAG 3833 >seq30 Length=259318 Score = 91.5 bits (100), Expect = 4e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 233261 AAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGA 233320 || |||| | ||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 165189 AAGAATGCCGCAGCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGA 165130 Query 233321 CCACCATC 233328 |||||||| Sbjct 165129 CCACCATC 165122 Score = 89.7 bits (98), Expect = 2e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 ||||| ||| ||| ||||| || ||||||||| ||||| || ||||| || ||| Sbjct 164841 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATG 164782 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTT 251939 ||||| || || | | || ||| ||| || |||||||||| || || ||| | Sbjct 164781 ATGATATCTGGAGTAATACCCTCACGAGTAAAAGGCATATCCTCTTG-TCTGTAAGTAAC 164723 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||||| ||||||||||| ||| ||||| |||||||| Sbjct 164722 ACCAATGGTGCCCTTCTGTCCGTGACGGGAAGCAAACTTGTCACCAAT 164675 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 165177 GCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATCTCTG 165118 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||| || | ||||| Sbjct 165117 GCACGACCTTCCACTGGCTG 165098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810792383657