Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq43 125 9e-23 seq2 125 9e-23 seq185 118 1e-20 seq26 111 2e-18 seq47 95.1 1e-13 >seq43 Length=216473 Score = 125 bits (138), Expect = 9e-23 Identities = 265/396 (67%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||| ||||| || ||| || ||||||||| || || || | Sbjct 141864 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAGAACGCCCCTCCCGG 141923 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | || |||| ||||| |||||||| ||| | || || || || ||||| Sbjct 141924 TCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTCACCCGTCGTCGCCCCGGCCAATC 141983 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| | |||| || ||||| ||| || ||||||| ||||| || || || ||| Sbjct 141984 CGCCATCACCACCCCCCGCAATGAGAAGGACCGCGTCACCATCCTCTCCGGTACCGAGTT 142043 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| || || ||| | || | | ||| || ||||| |||||||| ||| Sbjct 142044 CGGCCGGACCCTGGGCACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 142103 Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386 ||||| | ||| | || || | || || || || |||||||| | ||| || Sbjct 142104 GGACTACGGCAACAAGACCATGGACCGCTTCCCCCGCCCATCGCACGCCGATTTCACTTA 142163 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | || ||||||||||||||||| || || || || || || || || ||||| ||||| Sbjct 142164 CCAGGAGAAGTACGGCATCAAGGCTTCTTCCGGTGGTGGTCGTTCCTCCGCCCGTGAGAC 142223 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | || |||||||| || || || |||||||| Sbjct 142224 CATTGCCCGTGTCGCCGCTGGTGCCGTTGCCGAGAA 142259 >seq2 Length=1009776 Score = 125 bits (138), Expect = 9e-23 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||||| || || || |||| |||||| | || |||||||||| Sbjct 596561 CCAACTACCTGGATATCAAGCCCCTTCTTGACGTTGGATGCAAGACCGTCGCCAACATGA 596502 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||||| |||||||| ||||||||||| |||||| Sbjct 596501 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 596458 >seq185 Length=20677 Score = 118 bits (130), Expect = 1e-20 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 869825 AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACT 869884 ||||| | ||||||||||||||||| ||||||||||||||||||||||| | ||| | Sbjct 17493 AGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTTTTGTACATTTGCCAGATC 17552 Query 869885 TGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 | ||||| |||||||||||| || |||||||||||||| || | | ||||||||| Sbjct 17553 TCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATCCTGAAGGAGGGGTTCG 17612 Score = 105 bits (116), Expect = 8e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| ||||||||||| || | || ||||| Sbjct 16701 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATG 16760 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | | Sbjct 16761 TTCTCCATGAAGTCGAAGGGGTTGGAGGCCTTGTATACCTTGTCGTTACCGAGAGCGACC 16820 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| |||||||| || ||||||| | |||||||| |||| Sbjct 16821 AGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGA 16880 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| ||||| || ||||||| || |||| Sbjct 16881 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATG 16940 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 16941 ATGT-CCTGG 16949 Score = 87.8 bits (96), Expect = 2e-11 Identities = 172/250 (69%), Gaps = 11/250 (4%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 |||||||| | || ||||| ||||| ||||||| | ||| || ||||| ||| Sbjct 17055 CCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAAG 17114 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 || ||||| || ||||| ||| | | || |||| ||||| || ||| ||||||| Sbjct 17115 ATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGT--CGA----CTCCTTG 17168 Query 869339 T---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATG 869395 | | |||||||||| |||||||||||||| | | | || | ||||| ||| Sbjct 17169 TCAGTAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATG 17228 Query 869396 GCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGA 869454 ||| ||||||| || | | || || ||||| | |||||||| ||||| | || Sbjct 17229 GCGTTGAAGAGGTATGTGC-GCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGA 17287 Query 869455 ATAGGTCTCC 869464 || |||||| Sbjct 17288 GTACGTCTCC 17297 >seq26 Length=269500 Score = 111 bits (122), Expect = 2e-18 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || |||| || ||||| || ||||| || || | ||||| || Sbjct 166707 CTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGA 166648 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | |||| |||| || || | ||| ||| | || Sbjct 166647 GGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACC 166588 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || ||||| || || Sbjct 166587 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 166528 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | ||||| || || || || || | || || Sbjct 166527 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 166468 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 |||||||||||| || || | || ||||| |||| | ||||||| Sbjct 166467 GGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 166419 >seq47 Length=206893 Score = 95.1 bits (104), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 |||||||||| || ||| || ||||||||||| | ||| ||| || || || | Sbjct 112179 CGATCTTGGACTTGGGGTCGGAGGAACTCATCTTGCCAC---CGGAGAGACCGGGAACCA 112123 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163 ||||| | ||||||| |||| ||| | |||| || |||| |||| | | | Sbjct 112122 TGGGGTTCATCAGGTGGCAGCGGTTCTTAAAGCCCAGCTTGGGCATAGCGTCGTGAGACA 112063 Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223 |||| |||||||||||||| | || || |||| ||||| || |||||| || || Sbjct 112062 GACCAAAGATCTTGCGCTGGTCAAGACCACCGAACTCAGCGTCAACACCGAGGTACTCCT 112003 Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251 |||| | ||||||||||||||| || Sbjct 112002 CGTCCAAAAGCTGCATGAGCGGGTACAG 111975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107109574649437