Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq26 242 3e-59 seq44 98.7 9e-16 >seq26 Length=269500 Score = 242 bits (268), Expect = 3e-59 Identities = 1119/1750 (64%), Gaps = 64/1750 (4%) Strand=Plus/Minus Query 138286 ATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCATGTTAATTAAA 138345 ||||| ||||| ||| |||||| || || || || || ||| ||||| | || | | Sbjct 167975 ATGTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACA 167916 Query 138346 TTTTTACTTTTC---ATCTCCCACACGGTCTTGTATAGATCACGAAT--ATGTCG--CGG 138398 | || | |||||||| || |||||||| ||| || | ||||| ||| Sbjct 167915 GT---ACGCTGAGAAATCTCCCAAACAGTCTTGTACAGA----GACTTGATGTCCGCCGG 167863 Query 138399 TATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATC 138458 || | | ||| || || || |||||| ||| ||||||||| || |||||| || Sbjct 167862 AATACTGGGAATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTC 167803 Query 138459 GTTGTACAGATTCAACTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAAATT 138517 ||||| ||| | | |||| ||| | || | ||| | ||||| || | Sbjct 167802 CGACCACAGAC-CAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACT 167744 Query 138518 CACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGT 138577 |||| ||||| || || || ||||||||| ||| ||||||| || | ||||||| Sbjct 167743 CACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGT 167684 Query 138578 TTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTA 138637 | ||||||||||| | || | ||| || |||||| ||||| | || || || || | Sbjct 167683 TACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAA 167624 Query 138638 AACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTT 138697 ||||| |||| || | ||||| || || ||| ||||||| || || || | Sbjct 167623 CACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCACAGGTCACTGGGCGTGA 167564 Query 138698 TGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGT 138757 | |||||| ||| |||| | || ||| | | ||| ||| ||||||| || Sbjct 167563 CATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAGAGCCCTCGTACGTCGAGT 167504 Query 138758 ATACACCA--AACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGT 138815 | ||| ||| ||| | | | | ||||| || ||| | | |||||| || Sbjct 167503 AAGTACCTTCAACAGCAGCGATATCGCATGAA--GCCTCCAGAGCAGCGTGGTAAATGGT 167446 Query 138816 TTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCAT 138875 ||| ||||||| |||||| || |||||||| ||| | |||||||| || Sbjct 167445 CTCGAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGC 167386 Query 138876 CGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA 138935 | ||| || |||||||| || || || || || || | || || || |||| || Sbjct 167385 CAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTT--- 167329 Query 138936 CGCTTTTGCGG-CTTCGATA---GGATAATAGTTTACATCGATGATTTTGTTTAAATTTC 138991 ||| || ||| | |||| | || || | ||| ||||| ||||| ||| || || | Sbjct 167328 -GCTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGC 167270 Query 138992 GCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCG 139050 | || || ||||| || || | | | | | | || ||||| | ||||| | Sbjct 167269 GGACAACAACCTTGGTGACAT-CGTGCAGCTTCTGGAAGTCGTAG------CAGTTGTTG 167217 Query 139051 TCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCG 139110 | | || ||||| || | || ||| || | ||||||||| ||||| || Sbjct 167216 GTGTAG---TCAACAAAGGCAGGGAGAGCAAGCGACGCCAAGTTGCACACAGCCACCTCA 167160 Query 139111 TCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAA 139170 || || ||| ||| |||| ||| || | || | || || || || || | Sbjct 167159 TCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGG 167100 Query 139171 TTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTT 139230 || | || || || || ||||| || ||| ||||| | ||| | || | ||||| Sbjct 167099 TTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTC 167040 Query 139231 TCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAA 139290 ||| || | || | ||| | ||| | | ||| | || | | | | Sbjct 167039 TCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCA 166980 Query 139291 AGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAA 139350 || | || ||||||||||| |||| || | || ||| |||||||| |||| Sbjct 166979 CGTCCTTCCCGCTCGTACTTGACGTAAAGAGCCTCAAATTCCTCACCGTAACAATCAGCC 166920 Query 139351 AGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTC 139410 | | | |||| || || |||||||| | |||| |||||||| || || ||| || Sbjct 166919 AAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTC 166860 Query 139411 ATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAA 139470 ||||||| ||| || ||||||| || | | ||||||||| || | || ||| | Sbjct 166859 ATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTA 166800 Query 139471 CCCATGTTACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGAT 139528 || ||| || | | || |||||| ||||| || ||||||||||| || ||||| | Sbjct 166799 CCGTGGTT--CTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGT 166742 Query 139529 AGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTAT 139585 | ||||| | || || || ||| ||||| |||||||||| || ||| |||| Sbjct 166741 AAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTAT 166682 Query 139586 TGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--AT--- 139640 |||| || |||| ||| || | | |||| ||| || |||||||||| ||| || Sbjct 166681 TGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGC--CGGCAATATA 166624 Query 139641 GGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGA 139700 || || | | ||| |||| || | |||| ||||| || || | | ||||| Sbjct 166623 GGAACCGGT---AGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCATCTTGGA 166567 Query 139701 TATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCG 139759 || | | | || || | | || || || |||||| || ||||| |||| ||| Sbjct 166566 GATCATAGCACAGGTCTTG-AGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGT 166508 Query 139760 TGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGAC 139819 |||| ||||| || ||||| || || | || ||||| || || |||||| Sbjct 166507 CTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAG 166448 Query 139820 TCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC--GATGGCGCTC-ACAA 139876 ||||| ||||| | | ||||||| | | ||| ||||| || ||||| ||| Sbjct 166447 AGGCGTGAGTGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCAGAACACGCTCAACAT 166388 Query 139877 TATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCA 139936 |||| || ||||||||||| || ||||| | ||| || || || ||| | | Sbjct 166387 TATC---ACCCCAGATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAA 166331 Query 139937 CCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTAT 139996 | ||| || | || || ||| | || ||||||||| | ||||||||| || Sbjct 166330 TCTTGCCATCAAGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTGAATCCAAAGTACTGAT 166271 Query 139997 AGTTGAAATC 140006 ||||||| || Sbjct 166270 AGTTGAAGTC 166261 >seq44 Length=213652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 152226 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACTCTCGAGGTCGAGTCTTCC 152167 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 152166 GATACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 152107 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||||||||| | | | |||| || || ||| Sbjct 152106 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACCCTGTCTGACTACAAC 152047 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 152046 ATCCAGAAGGAGTCCACTCTCCACCTGGT 152018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895569837080