Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 120 5e-21 seq185 104 4e-16 seq47 96.9 5e-14 seq26 91.5 2e-12 seq10 87.8 3e-11 >seq2 Length=1009776 Score = 120 bits (132), Expect = 5e-21 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| || ||||||||||| || || | || ||||||||||| |||||| | | Sbjct 596561 CCAACTACCTGGATATCAAGCCCCTTCTTGACGTTGGATGCAAGACCGTCGCCAACATGA 596502 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 |||||||||||||||| ||||| || ||||||||||| |||||| Sbjct 596501 TCAAGGGCAAGTCGCCGGAGGAGATTCGCAAGACCTTCAACATC 596458 >seq185 Length=20677 Score = 104 bits (114), Expect = 4e-16 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 796297 AGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| | ||||||||||||||| || ||||||||||||||||||||||| | ||| ||| Sbjct 17493 AGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTTTTGTACATTTGCCAGATC 17552 Query 796357 CGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 ||||| ||| ||||| || || ||||| |||||||| || | || || || ||| Sbjct 17553 TCGTGGTACTTGATAGGGAAGAGCACGAAGCGGTTGGGGTTATCCTGAAGGAGGGGTTCG 17612 Score = 100 bits (110), Expect = 5e-15 Identities = 177/257 (69%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| ||||||||||| || | || Sbjct 16694 GACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAG 16753 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | ||| ||| ||| ||||| Sbjct 16754 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAGGCCTTGTATACCTTGTCGTTACCGAG 16813 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | || || |||||||||||||| || || || ||||||| | |||||||| Sbjct 16814 AGCGACCAGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCAT 16873 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||| || || ||| || | |||| | | ||||| ||||| || ||||||| || Sbjct 16874 ACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATC 16933 Query 794132 GATGATGATCTGCCTGG 794148 ||||||| | ||||| Sbjct 16934 AGTGATGATGT-CCTGG 16949 >seq47 Length=206893 Score = 96.9 bits (106), Expect = 5e-14 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||| |||||||| || ||| || ||||||||||| | || ||| || || Sbjct 112183 AGATCGATCTTGGACTTGGGGTCGGAGGAACTCATCTTGCCACC---GGAGAGACCGGGA 112127 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | ||||||| ||| || |||||||| |||| |||| | Sbjct 112126 ACCATGGGGTTCATCAGGTGGCAGCGGTTCTTAAAGCCCAGCTTGGGCATAGCGTCGTGA 112067 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 | | ||||||||||||||||||| | || || |||| ||||| || |||||| | Sbjct 112066 GACAGACCAAAGATCTTGCGCTGGTCAAGACCACCGAACTCAGCGTCAACACCGAGGTAC 112007 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 | |||||| | ||||||||||||||| Sbjct 112006 TCCTCGTCCAAAAGCTGCATGAGCGGGTA 111978 >seq26 Length=269500 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| || || || |||| || ||||| || ||||| || |||| ||||| || Sbjct 166707 CTGATCGACGTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGA 166648 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | |||| || | || || | ||| ||| | || Sbjct 166647 GGTACCGTTGGTGCCGGCAATATAGGAACCGGTAGCACGGATACGGTGAGCGTTGAGACC 166588 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| ||||||||| | || || | || || || || ||||| || || Sbjct 166587 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 166528 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || || | | || || Sbjct 166527 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 166468 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||| || || Sbjct 166467 GGCGTTGAAGAGGGTAGG 166450 >seq10 Length=389957 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| || ||||||||| ||||||| || || | | Sbjct 360055 GTACTTGGTAACGGCCTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCAGGAAG 360114 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || || | |||||||||||| | || | ||| ||| Sbjct 360115 GATGAGACGGACAGAGGTCTGGATCTCTCTGGAGGAGATGGTG 360157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916207998783479