Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq44 105 5e-18 >seq44 Length=213652 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || || || || |||||||| || || | | |||||| ||| || || || Sbjct 152480 TGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGC 152539 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | || | | ||||| ||||| ||||||||||| ||||| || | ||| Sbjct 152540 TTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTT 152599 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||||| | || | ||||||||| || || || ||||| || || |||||||| Sbjct 152600 GACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTC 152659 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || || || |||||||| Sbjct 152660 AGAGTCTTGACGAAAATCTGCAT 152682 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || || | ||||| ||||| || ||||||||||| || |||| Sbjct 152228 CCACCACGCAGACGGAGAACAAGGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGAG 152287 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || ||||| | |||| | ||||| ||||| ||| Sbjct 152288 AGCGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 152347 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | |||||| | || | || || || || || Sbjct 152348 ATACCCTCCTTGTCCTG-AATCTTCGACTTGACATTGTCAATGGTATCCGACGACTCGAC 152406 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 152407 CTCAAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAAATCTGCAT 152454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385217505155901