Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq44 109 1e-18 >seq44 Length=213652 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| ||||| || || ||||| || || || ||||| || | | || Sbjct 152011 ACGGAGAACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCC 152070 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 152071 GTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTT 152130 Query 82715 ATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 || || ||| ||||| || || || || || ||||| || || || || | ||| | Sbjct 152131 GTCCTGGATC-TTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGA 152189 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || |||| ||||| || || |||||||| Sbjct 152190 TGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 152226 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| |||||||| || ||||| || || || || || || | | || Sbjct 152468 CGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA 152527 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || | || || || || || || || ||||| Sbjct 152528 TCTTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTG 152587 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||||| || || || || || || ||| | || || || | ||| || Sbjct 152588 TCCTGGATCTTTGACTTGACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATG 152647 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 152648 GTCTTGCCAGTCAGAGTCTTGACGAAAATCTGCAT 152682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822658742379