Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq26 187 2e-42 seq44 120 3e-22 seq33 109 5e-19 seq68 96.9 3e-15 >seq26 Length=269500 Score = 187 bits (206), Expect = 2e-42 Identities = 1122/1766 (64%), Gaps = 69/1766 (4%) Strand=Plus/Minus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 || |||||||| ||| ||||| || || ||||||||||| ||||| | || | || Sbjct 167972 TTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCAGCAGCCATCTGAACAACAGTA 167913 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | ||||||||||| |||||| | | ||||| | | Sbjct 167912 CGCTGAGAA---ATCTCCCAAACAGTCTTGTACAGAGACTTGATGTCCGCCGGAATACTG 167856 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 ||| ||| | || ||| || || || || | || ||| | ||||| | Sbjct 167855 GGAATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCAC 167796 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 || || || | ||||| | || | | || || ||||| ||||| || || Sbjct 167795 AGACCAAGGTCAACAAGGTCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCC 167736 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 | ||| || ||| | || | ||| || | || || || |||||||||| |||| | Sbjct 167735 AACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGA 167676 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| ||| | |||||||||||||| | |||| Sbjct 167675 ATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGGAGCAGCGAGTTGCGAACACCG--- 167619 Query 148404 TTTT--TTATTTTGC-GCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGT 148458 || | ||| | ||| |||||||| ||| ||||| | || || || || || | Sbjct 167618 TTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCACA--GGTCACTGGGCGTGACAT 167561 Query 148459 TCCACATGTCGTACTGCAGAATGCCGCGGCTAG-CGGGGCTGCCCTCGTACGAGCTGTAC 148517 |||||||||| |||| || || || | | || | || ||||||||||| ||| Sbjct 167560 CCCACATGTCGAACTGAAGGATACC-CTGAGAGACAGGAGAGCCCTCGTACGTCGAGTAA 167502 Query 148518 GGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCG 148577 | || | | || || | ||||| ||||| || || ||| |||||| |||||| Sbjct 167501 GTACCTTCAACAGCAGCGATATCGCATGAAGCCTCCAGAGCAGCGTGGTAAATGGTCTCG 167442 Query 148578 GCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACA 148637 || ||| |||||||| | ||| | || | ||||| || || || Sbjct 167441 AAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATGCGAAGGGCCAGG 167382 Query 148638 AACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGG 148697 || || ||||| || ||||| || || || |||||||| ||||| |||||| | Sbjct 167381 AAGGCATCGGCCAGACCCTGGACACCAACACCAATGGGACGGTGACGCATGTTGCTGTTC 167322 Query 148698 CGCGCGCTC-TCGAGCGGATAGTGGTTGCGGTCGATGAT-CTTGTCAAGATTGCGCACCA 148755 || || ||| | | || |||||||| || ||||| | ||||| ||||| || | Sbjct 167321 CGGGC-CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAG-TTGCGGACAA 167264 Query 148756 CCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGT---ACTTG-TCATCTACGATGCAT 148811 | ||||| || | | ||||| | || |||| | ||| | | || || Sbjct 167263 CAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACAA 167204 Query 148812 CGGTTCACG----GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTA 148867 || || | || | || || | |||||||| ||| |||||| || |||| ||| Sbjct 167203 AGG--CAGGGAGAGCAAGCGACGCCAAGTTGCACACAGCCACCTCATCAGGAGCGCAGTA 167146 Query 148868 CTCTACGATCTCGGCGCACAGATTG---CTGC-ATTTGATCACGCCCACGTTCTTTTGAT 148923 ||| | ||||| | ||| || ||| |||| | | | | |||| |||||| || | Sbjct 167145 CTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT----CCCAGGTTCTTCTGGT 167090 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | ||||||| |||||| |||||||||| |||| | || ||||| ||| ||| | Sbjct 167089 TACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAG 167030 Query 148984 TTTCCACTATGAACCGA-TGCAGGTCCTGCGCGCGCACTTGCTGCT-----CGTAGCGAC 149037 ||||| || | | | ||| | ||| || |||| || | | || | Sbjct 167029 CTTCCAGAAT-AGCATACCACAGCTTCTGAGC-----CTTGATGGTAAGACGGCCACGTC 166976 Query 149038 CCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAG 149095 | ||| ||||||| | | ||| | ||| ||| || |||| ||||| ||||| | | Sbjct 166975 CTTCCCGCTCGTACTTGACGTAAAGAGC--CTCAAATTCCTCACCGTAACAATCAGCCAA 166918 Query 149096 ACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCAT 149155 || ||||||| || ||||||||||| | ||| |||||| | | || |||||||| Sbjct 166917 GCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCAT 166858 Query 149156 AAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC-AGTCT--TCGGC 149212 |||| |||||| | ||| || || | | ||||| || || | ||| || Sbjct 166857 GAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCGAGC---GCGAATCTCCTCCTT 166801 Query 149213 GCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTA 149272 || ||| || |||| || | || | || |||||||||||||| | ||| Sbjct 166800 ACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTA 166741 Query 149273 CACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTT 149329 | || | || || |||||| || ||||| ||||||| || | |||| || Sbjct 166740 AATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGACGTAACGAGCAGTGTTATT 166681 Query 149330 AAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACT 149389 || || || | |||||| |||| || | | || ||||| || | ||| Sbjct 166680 GAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTGGTGCCGGCAATATAGGA 166621 Query 149390 GCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGG 149448 ||| || || | ||| |||||| ||||| || ||||| | ||| ||||| Sbjct 166620 ACCGGTAGCACGGATACGGTGAGCGTTGAGACCGATACCACCCGCCAT-CTTGGAGATCA 166562 Query 149449 CCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCA 149508 || ||| ||| || ||||| || ||||| ||||| ||||||| | || Sbjct 166561 TAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCA 166502 Query 149509 GAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGT 149568 ||||| || | | || || | | || ||||| ||| | ||| || ||||| Sbjct 166501 AGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGT 166442 Query 149569 GTGT-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCG 149627 | || || | || || | ||| | | ||| | || || || || || | | ||| Sbjct 166441 GAGTGAAGAACTTGCTCG-ACATGAGATTGTAAGTTTCCAGAACACGCTCAACATTATCA 166383 Query 149628 CCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTT 149687 || ||| || | || || ||||| | ||| ||||| || ||||| | | ||| Sbjct 166382 CCCCAGATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCA 166323 Query 149688 CCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAG 149747 ||| ||||| | ||| |||| || |||||| | |||||||||| |||| ||| Sbjct 166322 TCAAGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTGAATCCAAAGTACTGATAGTTGAAG 166263 Query 149748 TCGCGGCCGTGGTCAATGGCGGCGTC 149773 || ||| | | | ||||||| | ||| Sbjct 166262 TCACGGTCATAGACAATGGCCGAGTC 166237 >seq44 Length=213652 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | || || ||||||||||| Sbjct 152486 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCAAGCTGCTTGCC 152544 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || || || || |||||||| ||||||| ||| Sbjct 152545 AGCAAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTT 152604 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | || ||| || |||| |||| ||| ||||| |||||||| Sbjct 152605 GACGTTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGT 152664 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 152665 CTTGACGAAAATCTGCAT 152682 Score = 118 bits (130), Expect = 1e-21 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| | ||||| ||||||||||| Sbjct 152714 GTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 152772 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 152773 AGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTT 152832 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | |||| || |||| || ||| || |||| ||||| ||| |||||||| Sbjct 152833 GACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 152886 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || || || ||| |||||| |||||||| | Sbjct 152030 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGGCCGTCCTCCAGCTGCTTAC 152087 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || ||||| || |||||||| |||||| || Sbjct 152088 CAGCAAAGATAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCT 152147 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || |||| | ||| || |||| |||| ||| || |||||||||| Sbjct 152148 TGACGTTGTCGATGGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGAG 152207 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 152208 TCTTCACGAAGATCTGCAT 152226 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| || || || ||||| || | ||| | | | ||||| |||||||| | Sbjct 152257 GGTGGACTCCTTTTGAATGTTGTAGTCCGAGAGCGTACGGCCA-TCCTCAAGCTGCTTAC 152315 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| || || || || |||||||| ||||| || Sbjct 152316 CAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACT 152375 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| || || | | ||| || || | ||| | ||| ||||||||||| | Sbjct 152376 TGACATTGTCAATGGTATCCGACGACTCGACCTCAAGGGTAATGGTCTTGCCGGTCAGGG 152435 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 152436 TCTTGACGAAAATCTGCAT 152454 >seq33 Length=249776 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| |||| || ||||||||||| || || ||||| |||||| Sbjct 209209 TCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 209150 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | | ||| || || | ||||| Sbjct 209149 TCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCAAGGGTGATC 209090 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 209089 GTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 209055 >seq68 Length=156602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 123706 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 123764 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||| ||||| || || || || |||||||| |||||| ||| Sbjct 123765 AGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 123824 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| || || ||||| || Sbjct 123825 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 123884 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 123885 CTTGACGAAA 123894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418618563640