Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq26 100 3e-16 seq44 89.7 5e-13 >seq26 Length=269500 Score = 100 bits (110), Expect = 3e-16 Identities = 336/512 (66%), Gaps = 12/512 (2%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || |||| |||||| | | || | || |||| ||||| Sbjct 167759 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 167700 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || || || | || |||| || | || || |||||| ||||| Sbjct 167699 TCGAAGCACTCGTTGTTACCCAGAATCTGGGAAGTTGACGCAGTGGGCATGGGCGCCAGG 167640 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | || | ||||||| || | ||| |||||| Sbjct 167639 AGCAGCGAGTTGCGAACACCGTTCTGCTTAATCTGCTCCTTCAGAGAGTTCCAATCCCAC 167580 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | || || |||||| || | |||||||||| |||| || | || || | | ||| Sbjct 167579 AGGTC-ACT-GGGCGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAGACAGGAG 167522 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAGC 147189 ||| || |||| | ||| | || || | || | || || || ||||| || Sbjct 167521 AGCCCTCGTACGTCGAGTAAGTACCTTCAA-CAGCAGCGATATCGCATGAAGCCTCCAGA 167463 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAG--GACGGTCGCTTCTTCGCTCT 147247 || | | ||| ||||| ||| ||| || ||||| || |||| || || | || Sbjct 167462 GCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTGACGA--GCCTCGGCAGACT 167405 Query 147248 CGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAG 147307 | ||||||| || || || ||||||||||||| |||||||| ||| || || || | Sbjct 167404 CAAAAGGCATGCGAAGGGCCAGGAAGGCATCGGCCAGACCCTGGACACCAACACCAATGG 167345 Query 147308 GTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAATA 147366 | || || ||||||| | || |||| | | || |||||||| |||||| Sbjct 167344 GACGGTGACGCATGTTGCTGTTCCGGGC-CTCGACAACAGGGTAGTGGTTCACATCAATG 167286 Query 147367 ATCTTGTTGAGGTTACGCACTACAACTTTAGT 147398 || ||| | ||| || || ||||| || || Sbjct 167285 ATACGGTTCAAGTTGCGGACAACAACCTTGGT 167254 >seq44 Length=213652 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | ||| || |||||| ||||| || || | | Sbjct 152489 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCA 152548 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || || || || || || ||| || | Sbjct 152549 AAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTTGACTTGACG 152608 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | ||| || |||| || | || || ||||||||||| || Sbjct 152609 TTGTCGATAGTGTCAGAGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGAGTCTTG 152668 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 152669 ACGAAAATCTGCAT 152682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609049291960