Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq185 203 5e-46 seq26 118 2e-20 >seq185 Length=20677 Score = 203 bits (224), Expect = 5e-46 Identities = 397/572 (69%), Gaps = 26/572 (5%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||| || || || | |||||||| |||||||| || || ||||| ||| ||||| Sbjct 17612 CGAACCCCTCCTTCAGGATAACCCCAACCGCTTCGTGCTCTTCCCTATCAAGTACCACGA 17553 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| ||||||||||||||||| || ||||||||||||||| | |||| Sbjct 17552 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGACC 17494 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| ||| ||| | || || | ||| Sbjct 17493 TTTCCAAGGATCTTCACG----ACTGGAACAACCGCATGACTAAGGATGAACAGTTCTTC 17438 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| ||||| || ||||| || ||||||| || || || || ||||||| ||| Sbjct 17437 ATCTCTCACGTTCTTGCCTTCTT-CGCCGCCTCTGACGGTATTGTTAACGAGAACTTGGT 17379 Query 1455948 CGGCCGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 || || || | || ||||| || | || || || |||| || ||||| ||||||| Sbjct 17378 CGAGCGTTTCTCTGCT-GAGGTTCAGATCCCTGAAGCCCGTTGCTTCTACGGTTTCCAGA 17320 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||| ||||| || || ||||| | ||||| ||||||||| | |||| Sbjct 17319 TCATGATGGAGAACATTCACTCGGAGACGTACTCTTTGCTGATTGACACCTACATTAAGG 17260 Query 1456067 ACCCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | || | || ||||||| |||||| ||||| | || | | | Sbjct 17259 AGCCTGCTCAGC-GCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATTCGCCGC 17201 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 |||||||||||||| |||||||||| | |||||||| ||||| ||||| ||| Sbjct 17200 AAGGCCGACTGGGCCCTGAAGTGGATTACTGACAAGGAG----TCGAC-TTTTGCTCAGC 17146 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCT 1456241 | || || | ||| ||||| || ||||| ||||| ||||| || ||| | |||||| Sbjct 17145 GTCTTGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCCATCT 17086 Query 1456242 TTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 | ||||| ||||| || | ||||||||| Sbjct 17085 TCTGGCTGCGCAAGCGTGGTTTGATGCCCGGT 17054 >seq26 Length=269500 Score = 118 bits (130), Expect = 2e-20 Identities = 204/291 (70%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 ||||||| |||| ||| ||||| ||| || | || || ||||| || ||||| || || Sbjct 166419 CATGTCG-AGCAAGTTCTTCAC-TCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCT 166476 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || ||| ||| || ||||| || | |||||||||| || ||||| || ||| Sbjct 166477 CAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAGGACAGTATCGAAGGTATC 166536 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 ||||| || |||||| || || | ||||||||| ||| || || |||||| | | Sbjct 166537 TATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC 166596 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | || || | || |||| | || ||||||||||| || ||||| Sbjct 166597 GCTCACCGTATCCGTGCTACCGGTTCCTATATTGCCGGCACCAACGGTACCTCGAACGGT 166656 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||| || || || || |||| || || |||||||| ||| Sbjct 166657 ATTGTTCCTATGCTGCGTGTCTTCAATAACACTGCTCGTTACGTCGATCAG 166707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177776380886482