Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20savannae_20[genbank_20GCA_5F001483325.1_202015-12-30] 361 sequences; 28,542,441 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq26 167 3e-36 seq185 129 8e-25 >seq26 Length=269500 Score = 167 bits (184), Expect = 3e-36 Identities = 554/849 (65%), Gaps = 26/849 (3%) Strand=Plus/Minus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 ||||| ||||| || | ||| |||||||| ||| ||| |||||||| | || || Sbjct 167111 ATAGTTCCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAA 167052 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||||||| || |||||| ||| | ||||| | ||| | | ||| || || Sbjct 167051 GGGTTACCAGTCTCCGTCTGAGCTTCCAGAATAGCATACCACAGCTTCTGAGCCTTGATG 166992 Query 69472 -----ACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTC 69524 |||| | || |||| | | | || ||| ||| | |||| || ||||| Sbjct 166991 GTAAGACGGCCACGTC---CTTCCCGCT--CGTACTTGACGTAAAGAGCC--TCAAATTC 166939 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 || || || |||| |||| ||||| || || || || ||||| | | ||| | | Sbjct 166938 CTCACCGTAACAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCC 166879 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 | | || ||| || ||||| || | |||||| ||||| || || | || | ||| | Sbjct 166878 GTTCTTCTCAACACGCTTCATGAACAAATCGGGGATCCACAGGGCAAGGAACAAATCGCG 166819 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704 | | | | || || || || || || || || || ||||| | | ||||| Sbjct 166818 AGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGGAGGTCAAGGAACTCAAACACATCAGC 166759 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 ||||| || || || || || || | | || || || || || || |||||||| | Sbjct 166758 GTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTACCACCCTGATCGAC 166699 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 ||| | ||||||||||| |||| | |||||| |||| |||||| || || |||| || Sbjct 166698 GTAACGAGCAGTGTTATTGAAGACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTT 166639 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACCTATTCCTC 69883 || || | |||||| || | || || ||| | | | | ||||| || || | Sbjct 166638 GGTGCCGGCAATATAGGAACCGGTAGCACGGATA-CGGTGAGCGTTGAGACCGATACCAC 166580 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | ||||| || ||||| | |||||| || | || ||||| ||||| || || || | Sbjct 166579 CCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGT 166520 Query 69944 CATCTATCATGT-TAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTA 70002 | || |||||| || ||| || ||| ||| | ||| | || || || || || Sbjct 166519 CCTCCTTCATGTCTACCAAG-AAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTG 166461 Query 70003 AATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATA 70062 || | |||||||| ||||||||||| | || || | |||||||| ||||| | | Sbjct 166460 AAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGATTGTAAGTTTCCAGA 166401 Query 70063 GCTGATTCTA---TATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 | || | |||| || | | || || | || |||||||| | ||| ||||| Sbjct 166400 ACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACACGCATAATCATGTGCTG 166345 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 ||| || || || | || || | || | ||||| ||| ||||||| || || || Sbjct 166344 AGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTGAA 166285 Query 70179 CCCAAAATA 70187 ||||| || Sbjct 166284 TCCAAAGTA 166276 >seq185 Length=20677 Score = 129 bits (142), Expect = 8e-25 Identities = 369/562 (66%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| || || || || |||||||| | | || | ||||| || || || | Sbjct 16994 GCAGGCAAAATCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAA 17053 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| | ||||||||| ||||| || |||| ||||||| ||||| ||||| Sbjct 17054 ACCGGGCATCAAACCACGCTTGCGCAGCCAGAAGATGGAGGCAAAAGCACCAGAGAAGAA 17113 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT 39793 ||| || || || || || || |||||||| | || | || | | || || | || Sbjct 17114 GATACCCTCAACAGCGGCGAAGGCAACAAGACGCTGAGCAAAAGTCGACTCCTTGTCAGT 17173 Query 39794 A-TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 | |||||||| | ||||| || || || | || || || || || || || || Sbjct 17174 AATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTT 17233 Query 39853 AAAGAGATAATGTTTT-TCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| || ||| | | || || |||| || || || || | || | ||| Sbjct 17234 GAAGAGGTA-TGTGCGCTGAGCAGGCTCCTTAATGTAGGTGTCAATCAGCAAAGAGTACG 17292 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || || || ||||| || ||| ||||| || ||||| || || | ||||||| | Sbjct 17293 TCTCCGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCAGGGA 17352 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 | || ||||| | | | || | || |||| || || || || || || ||| |||| Sbjct 17353 TCTGAACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTAACAATACCGTCAGAGGCGG 17412 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCC 40088 | || || || | || || || || | | |||||| |||| || |||| Sbjct 17413 CGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGTTCATCCTTAGTCATGCGGTTGTTCC 17472 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | ||| || || | || | || || || ||||| || || ||||| |||| Sbjct 17473 AGTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCT 17532 Query 40149 TTTTGTACATGTTCCATATATC 40170 |||||||||| | ||| || || Sbjct 17533 TTTTGTACATTTGCCAGATCTC 17554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905700324040